Detail information of Os02g0717400_circ_g.7


General Information
CircRNA Name Os02g0717400_circ_g.7
ID in PlantcircBase osa_circ_016273
Alias NA
Organism Oryza sativa
Position chr2: 29766797-29768467  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0717400
Parent gene annotation Tetratricopeptide-like helical domain containing protein. (Os02t
0717400-01)
Parent gene strand -
Alternative splicing Os02g0717400_circ_g.2 Os02g0717400_circ_g.3 Os02g0717400_circ_g.4 Os02g0717400_circ_g.5 Os02g0717400_circ_g.6 Os02g0717400_circ_g.8 Os02g0717400_circ_g.9 Os02g0717400_circ_g.10 Os02g0717400_circ_g.11 Os02g0717400_circ_g.12 Os02g0717400_circ_g.13 Os02g0717400_circ_g.14 Os02g0717400_circ_g.15 Os02g0717400_circ_g.16 Os02g0717400_circ_g.17
Support reads 2
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0717400-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCAGATGTGCCAGGTCTAGGACCAGAGTCTTCATCAAACTTATCAGGTCTAGGAACAGAGTT
TTCATCAGATTTGGCAGGTCCTTCCGCAGTTGTAGCctcagccatccggattttccctgcttcc
ataagattccttgcatctgtacatacaggaacagaatgcttgacaactggttggagattcagga
tatctgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 969
Transcript exons: 29766797-29766955,29767094-29767162,29767235-29767384,29
767474-29767605,29767854-29767940,29768023-29768193,2976
8267-29768467
CTCAGCCATCCGGATTTTCCCTGCTTCCATAAGATTCCTTGCATCTGTACATACAGGAACAGAA
TGCTTGACAACTGGTTGGAGATTCAGGATATCTGAAGGCTGGAATGGAGCTGCAGCATCGAGGT
CATATTTGCGAGAAGCAATTGTTATTCCCACCTTTTGGCAAAGATTGCGGAGTACTGCAACTCT
TTTAGCACCAGTCTTAGCATCATCGGTCACTTCAAACAGATATTTATGTTTCGCAAACTCCTTA
ATGTTAGACCAAATCCCATCAGATGTTAGATGGGAAAATGTTGGCACAATGTTCTTTGAAGAAG
CAGAAAGGCTTGATTTCTGTCCCTCGGCAGATTTTTGATTTTGAGTCTTCTCATGACCCTTTTG
GGTTTTTGTATCCGTACTGTCAACACTACCTTTTGTGGAAGGTGCCAAAACATTGCCAATAAAA
CAATTTAAGAAATGAGCAATGGCTGGTCCAATATCATGATCTGCGCTTTGCCTAAGTATTTCCT
TGACCACATGCTTTGCCGACCTAACAATTATCTCAGAAGACAACAAACCCCGTAGATGTGGCAA
ATGCTTGATCATGTCAGCTACTTTGCCAAGATACCTAACATTTATCCCATTGCTATGCAGCACA
TCAGTCAAAGTCTGCCCATCCATGGGGGAGACATCTAGGGAGCAGAGATCCTGAACAAACTTTG
GTATCACCGTGTCTAGAAGATACGAACCAACCTTTTTAACCAATGCTTCATCTGCTGCAATCTC
CTCTGGACTACCAGCAAGTTTGTACTCTGTAAACACATTTGGATTAAAAAGGATTTCTGCAGTT
GACTCGTTATGTTCAGCTGGTTTAGTAGCAGAGCTGTCATCAGATGTGCCAGGTCTAGGACCAG
AGTCTTCATCAAACTTATCAGGTCTAGGAACAGAGTTTTCATCAGATTTGGCAGGTCCTTCCGC
AGTTGTAGC

Genomic sequence CTCAGCCATCCGGATTTTCCCTGCTTCCATAAGATTCCTTGCATCTGTACATACAGGAACAGAA
TGCTTGACAACTGGTTGGAGATTCAGGATATCTGAAGGCTGGAATGGAGCTGCAGCATCGAGGT
CATATTTGCGAGAAGCAATTGTTATTCCCACCTATTATGCAGATTATGTCACAATTGACCAAAA
GAGCACATAAGAATTATTTGTTGGAACTACTTGCAGCCAAACTATTAAACATTTCTCTGAAAGA
GAATAGCAAACTCAATGAATATAGAGCTGAACAAAGCAAACCTTTTGGCAAAGATTGCGGAGTA
CTGCAACTCTTTTAGCACCAGTCTTAGCATCATCGGTCACTTCAAACTAAATAAAAGGAGTGTT
ATATTGATGGCATCTATAGAAAACTACGGAAACAAAAGAAGCAATAGCCACTACCAGATATTTA
TGTTTCGCAAACTCCTTAATGTTAGACCAAATCCCATCAGATGTTAGATGGGAAAATGTTGGCA
CAATGTTCTTTGAAGAAGCAGAAAGGCTTGATTTCTGTCCCTCGGCAGATTTTTGATTTTGAGT
CTTCTCATGACCCTACCAATTTGAAAATCCAAAAGAATAGCCATTAGTTGCAGTTAGAATACAA
GTGATGACATGAGTTTCTTACACGTGGAATAGCATACCTTTTGGGTTTTTGTATCCGTACTGTC
AACACTACCTTTTGTGGAAGGTGCCAAAACATTGCCAATAAAACAATTTAAGAAATGAGCAATG
GCTGGTCCAATATCATGATCTGCGCTTTGCCTAAGTATTTCCTGGGATGGGAACAACAAACAGT
ACGGTCAACAAATTGGCATAGTTTTTCCAATGACTTCTTATTAAACGTGGTAAAACAGGAAAGT
TATGCATTTTGATGAATAATCTTATCCATATAACATTTGTTTGAATGGACAGCAGGATGAGTCT
GGGTGACAGTATGACTCATCCTTTAGAAATTATTAAAGAAATAAATGCAAAGAATTTCCATCAT
AAAAACAAACAGCTGGTAAGATAGATCTATCACCTTGACCACATGCTTTGCCGACCTAACAATT
ATCTCAGAAGACAACAAACCCCGTAGATGTGGCAAATGCTTGATCATGTCAGCTACCTGAGAAA
GGAATTAGATAATGAACATACTATACATAAAATGCAATGAACTCACATCCAGCTGGATCAGTTC
AGAGACTCACTTTGCCAAGATACCTAACATTTATCCCATTGCTATGCAGCACATCAGTCAAAGT
CTGCCCATCCATGGGGGAGACATCTAGGGAGCAGAGATCCTGAACAAACTTTGGTATCACCGTG
TCTAGAAGATACGAACCAACCTTTTTAACCAATGCTTCATCTGCTGCAATCTCCTAAGAAAGCA
AAGAGTAGGCTGTCAATAAATTAGAGCAGGGATATCAAGCAGGGAGTAGTTCTAAGACTAACCT
CTGGACTACCAGCAAGTTTGTACTCTGTAAACACATTTGGATTAAAAAGGATTTCTGCAGTTGA
CTCGTTATGTTCAGCTGGTTTAGTAGCAGAGCTGTCATCAGATGTGCCAGGTCTAGGACCAGAG
TCTTCATCAAACTTATCAGGTCTAGGAACAGAGTTTTCATCAGATTTGGCAGGTCCTTCCGCAG
TTGTAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.240922487
Functional Information
Coding potential Y
Potential coding position 29768340-29766892(+)
29768090-29766799(-)
29766842-29768144(-)
Potential amino acid sequence MFSWFSSRAVIRCARSRTRVFIKLIRSRNRVFIRFGRSFRSCSLSHPDFPCFHKIPCICTYRNR
MLDNWLEIQDI*(+)
MDGQTLTDVLHSNGINVRYLGKVADMIKHLPHLRGLLSSEIIVRSAKHVVKEILRQSADHDIGP
AIAHFLNCFIGNVLAPSTKGSVDSTDTKTQKGHEKTQNQKSAEGQKSSLSASSKNIVPTFSHLT
SDGIWSNIKEFAKHKYLFEVTDDAKTGAKRVAVLRNLCQKVGITIASRKYDLDAAAPFQPSDIL
NLQPVVKHSVPVCTDARNLMEAGKIRMAEATTAEGPAKSDENSVPRPDKFDEDSGPRPGTSDDS
SATKPAEHNESTAEILFNPNVFTEYKLAGSPEEIAADEALVKKVGSYLLDTVIPKFVQDLCSLD
VSPMDGQTLTDVLHSNGINVRYLGKVADMIKHLPHLRGLLSSEIIVRSAKHVVKEILRQSADHD
IGPAIAHFLNCFIGNVLAPSTKGSVDSTDTKTQKGHEKTQNQKSAEGQKSSLSASSKNIVPTFS
HLTSDGIWSNIKEFAKHKYLFEVTDDAKTGAKRVAVLRNLCQKVGITIASRKYDLDAAAPFQPS
DILNLQPVVKHSVPVCTDARNLMEAGKIRMAEATTAEGPAKSDENSVPRPDKFDEDSGPRPGTS
DDSSATKPAEHNESTAEILFNPNVFTEYKLAGSPEEIAADEALVKKVGSYLLDTVIPKFVQDLC
SLDVSPMDGQTLTDVLHSNGINVRYLGKVADMIKHLPHLRGLLSSEIIVRSAKHVVKEILRQSA
DHDIGPAIAHFLNCFIGNVLAPSTKGSVDSTDTKTQKGHEKTQNQKSAEGQKSSLSASSKNIVP
TFSHLTSDGIWSNIKEFAKHKYLFEVTDDAKTGAKRVAVLRNLCQKVGITIASRKYDLDAAAPF
QPSDILNLQPVVKHSVPVCTDARNLMEAGKIRMAEATTAEGPAKSDENSVPRPDKFDEDSGPRP
GTSDDSSATKPAEHNESTAEILFNPNVFTEYKLAGSPEEIAADEALVKKVGSYLLDTVIPKFVQ
DLCSLDVSPMDGQTLTDVLHSNGINVRYLGKVADMIKHLPHLRGLLSSEIIVRSAKHVVKEILR
QSADHDIGPAIAHFLNCFIGNVLAPSTKGSVDSTDTKTQKGHEKTQNQKSAEGQKSSLSASSKN
IVPTFSHLTSDGIWSNIKEFAKHKYLFEVTDDAKTGAKRVAVLRNLCQKVGITIASRKYDLDAA
APFQPSDILNLQPVVKHSVPVCTDARNLMEAGKIRMAE(-)
MQGILWKQGKSGWLRLQLRKDLPNLMKTLFLDLISLMKTLVLDLAHLMTALLLNQLNITSQLQK
SFLIQMCLQSTNLLVVQRRLQQMKHWLKRLVRIF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017