Plant Circular RNA Database

Detail information of Zm00001d014344_circ_g.3

			
						 General Information
					
						CircRNA Name
						Zm00001d014344_circ_g.3
					
						ID in PlantcircBase
						zma_circ_008468
					
						Alias
						Zm05circ00041, zma_circ_0001817, GRMZM2G350626_C1
					
						Organism
						
							Zea mays						
					
						Position
						
							chr5: 42056974-42059628  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2, find_circ
					
						Parent gene
						
							Zm00001d014344						
					
						Parent gene annotation
						
							P-loop containing nucleoside triphosphate hydrolases superfamily
 protein
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Zm00001d014344_circ_g.2 Zm00001d014344_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d014344_T006:4
Zm00001d014344_T042:4
Zm00001d014344_T007:4
Zm00001d014344_T038:4
Zm00001d014344_T016:4
Zm00001d014344_T030:4
Zm00001d014344_T053:5
Zm00001d014344_T032:4
Zm00001d014344_T064:4
Zm00001d014344_T025:4
Zm00001d014344_T018:4
Zm00001d014344_T009:4
Zm00001d014344_T061:5
Zm00001d014344_T037:4
Zm00001d014344_T004:4
Zm00001d014344_T035:5
Zm00001d014344_T019:3
Zm00001d014344_T046:3
Zm00001d014344_T001:3
Zm00001d014344_T008:5
Zm00001d014344_T041:4
Zm00001d014344_T027:4
Zm00001d014344_T005:4
Zm00001d014344_T036:5
Zm00001d014344_T029:3
Zm00001d014344_T024:3
Zm00001d014344_T020:4
Zm00001d014344_T048:3
Zm00001d014344_T034:4
Zm00001d014344_T012:4
Zm00001d014344_T023:4
Zm00001d014344_T021:4
Zm00001d014344_T054:6
Zm00001d014344_T003:4
Zm00001d014344_T063:4
Zm00001d014344_T014:4
Zm00001d014344_T002:4
Zm00001d014344_T059:5
Zm00001d014344_T022:4

General Information
CircRNA Name	Zm00001d014344_circ_g.3
ID in PlantcircBase	zma_circ_008468
Alias	Zm05circ00041, zma_circ_0001817, GRMZM2G350626_C1
Organism	Zea mays
Position	chr5: 42056974-42059628 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2, find_circ
Parent gene	Zm00001d014344
Parent gene annotation	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Parent gene strand	-
Alternative splicing	Zm00001d014344_circ_g.2 Zm00001d014344_circ_g.4
Support reads	NA
Tissues	leaf, endosperm, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d014344_T006:4 Zm00001d014344_T042:4 Zm00001d014344_T007:4 Zm00001d014344_T038:4 Zm00001d014344_T016:4 Zm00001d014344_T030:4 Zm00001d014344_T053:5 Zm00001d014344_T032:4 Zm00001d014344_T064:4 Zm00001d014344_T025:4 Zm00001d014344_T018:4 Zm00001d014344_T009:4 Zm00001d014344_T061:5 Zm00001d014344_T037:4 Zm00001d014344_T004:4 Zm00001d014344_T035:5 Zm00001d014344_T019:3 Zm00001d014344_T046:3 Zm00001d014344_T001:3 Zm00001d014344_T008:5 Zm00001d014344_T041:4 Zm00001d014344_T027:4 Zm00001d014344_T005:4 Zm00001d014344_T036:5 Zm00001d014344_T029:3 Zm00001d014344_T024:3 Zm00001d014344_T020:4 Zm00001d014344_T048:3 Zm00001d014344_T034:4 Zm00001d014344_T012:4 Zm00001d014344_T023:4 Zm00001d014344_T021:4 Zm00001d014344_T054:6 Zm00001d014344_T003:4 Zm00001d014344_T063:4 Zm00001d014344_T014:4 Zm00001d014344_T002:4 Zm00001d014344_T059:5 Zm00001d014344_T022:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGATTGAATCTTTCAACTAGTGGAACCAGTAGCAATTTCCGGGAATATTAAGGCACCCAATGGA
GGGAAGTTATTGTTGCCTTTCTGTCGGGACAAGCATctgttagaatcaaatgaatcaccaagat
aaaaatggataatagctccaataggatcacgtgtatcaataggcatgtggcgcctaacagtacc
aacaagcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 2020
Transcript exons: 42056974-42057142,42057231-42057326,42057414-42057602,42
058063-42059628
CTGTTAGAATCAAATGAATCACCAAGATAAAAATGGATAATAGCTCCAATAGGATCACGTGTAT
CAATAGGCATGTGGCGCCTAACAGTACCAACAAGCCGGCCACATTCTGATACAGCATCCTCATT
TGAACCCATAGCTCTCCTACTAGATCGGCCTGATTGTGCAGCTGAACCAGGCCGTGGAAACGAT
AGAATAGCAACATCGCCTTCTTTGAAATTCCATTTTTGTTCATGGATCGGTAGAACGACAACAT
CGTACCATCCTCTTTCACGTCTATCGACAGTTTTTACTCGGACCGCTACATGTGCATCCCTTCC
CACAGCCTCAAGACTCTCCTCATACGAACTATAAAGCTGAGCTCTGCATTCCTCAAAAAGCAAA
GGCTCAAAAACTCTAATGTACTCCTCAGCAGATTCAAAGCTTCCAGGAACACACTCAAGTTCTG
CCTCCTCTGGATTGTGCCAGAACTTATCGTTTGTCACCTCCCTTATAAGTCGCTCAACAGATGA
ATCCTGTACATTGTTTACAAAAGTTTGCTTTTTGGAAATAATAGACCTTTTGCTGGCTGGCTTC
TGATCAGCATTGTTTGTTCCTGTTAGAAATGTTCTTTGGGAAGAGAATGATCGGCTTTTTGGTT
GCTTCAAGTCCATGGATTGCTTGAATGAAGCTTGTCTTTGGACAGGCTGCTGATACCCATCTGA
GGCTGGATCTTCTGCATTCATTTTCTTTGACCGGCCCTGGGTACCCAACTCAGCATCACCATTG
GATTCAGTGTATTGGTCACTAGGATCTGCAGAATTGCTTCGCTCTGATCCCATCATTTCAGGTT
GTCTCTGATCCCTGATTGCTTGCTGACTTTGTTTTTCTGCAGCCTTTTCACCAGCACCACGAGA
AGCTTCCTTCACTGTACGTGTAACAATCGGTGCTGGAAAAGATGACTGCCTCCTGGGTGTTGAT
GTCTTCATTGTACCAGCTTGTTTCGCATCCTCTACATTGATGAAGACAGTTTGCCTAGCTCGTT
TTTTGCCTAACATGGCCTCTTTGTGTTCATTTAACTTGGGCCTCTTTGCGGGGTTGCTCGCAAA
CCTCAAAGCATAATTGGCTTCGACTCCTTTAACATCCCTTGACCTGTTGCAAAGATCTAGATCA
TCACCAGGCTGATTTCCTTTACATTCAGAATTTTGCATGTTATCTGATCCTGTGGACCCGTGAA
CCCGATCTTCAGATGCATCAACCTTTTCAGCATCACTACATTCCGCAGCAGTATCATCTTTAGT
CACATCACCAGATTTAATAAGATGGGGCTCGCTCTCTTGGGATTCTTTCTTCAAATTAGTGCTT
GCGGTACCAGTGAACTCATCTTTGTTGCTACTCCCTGCATTTTCAGAAATGCCATCTGCATCAG
ACCATTCTCCTTCTTCTCTTTCAATGGCTTGTGACACCTTATTGCAAGTCTCAACCTTTGAAGC
AGCACTGTCGGTGATCTGATTGTTTACCATGGACAGTGATGCTATACTAGAATTATGATTATCT
TCCACCTTCATCGGCTCCTTTGTATTGTTTGAATCTTTGCTGTTCCTCACAAAAGGCTGAAATC
CAGAACCAATGGATGCATGCTTAAAGGCATTATTGTTCAATATCCCCTGCGACTGTGATCCTTC
CCCTCGCTGAAACAAGGTTGGGGCATATGTCGTCGGAACACGAAGGGATTTCTGAGGTTGTGAC
ACGACAACAGCAGCTTCTTGTAACGCCACAACAACAGCTTCTTGTGGTACGACAGCAGCAGATT
CTTTTGGCACAACAGCAGCAGATTCTTTTGGCACGACAGCAGCTGCTGCTTCTTCAACTTCTGC
TGGGAGTTCGTTAAGGTCAAATAACATCCTTCCTCGAGAACCCATGTCATGTGTAGATGCATAT
AGATTGAATCTTTCAACTAGTGGAACCAGTAGCAATTTCCGGGAATATTAAGGCACCCAATGGA
GGGAAGTTATTGTTGCCTTTCTGTCGGGACAAGCAT
						
					

						Genomic sequence
						
							CTGTTAGAATCAAATGAATCACCAAGATAAAAATGGATAATAGCTCCAATAGGATCACGTGTAT
CAATAGGCATGTGGCGCCTAACAGTACCAACAAGCCGGCCACATTCTGATACAGCATCCTCATT
TGAACCCATAGCTCTCCTACTAGATCGGCCTGATTGTGCAGCTGAAAATACCAACACAACAGCT
AACTAAGAAAAACGTCTATCGACAGTTATTGCAAATAAAAAACTAAGACAATTCAGTAAATATA
CCTGAACCAGGCCGTGGAAACGATAGAATAGCAACATCGCCTTCTTTGAAATTCCATTTTTGTT
CATGGATCGGTAGAACGACAACATCGTACCATCCTGGATGCATTAATATTCAGGTTACTGCACT
GATTGGGGTATTCAACTTCGTGTTCTATAAAAGCGCAACAAACCAATCCCACATACCTCTTTCA
CGTCTATCGACAGTTTTTACTCGGACCGCTACATGTGCATCCCTTCCCACAGCCTCAAGACTCT
CCTCATACGAACTATAAAGCTGAGCTCTGCATTCCTCAAAAAGCAAAGGCTCAAAAACTCTAAT
GTACTCCTCAGCAGATTCAAAGCTTCCAGGAACACACTCAAGTTCTGCCTCCTCTGTTCAGATA
AAGAAATATATGTTATTTATATGCCAAATTACAACCACACACACATGCAAACACAATAGTGATT
TTACAACTTCTGGAATGGAACAAGATAACATCAAATATGTGATCATTAGTGAGAAACACAATGA
CCAAAATATCAACAATCTTCAGTACAGAGCAAGTGGCGAAGTGTAACATGGAGCTGCCACATTT
TTAAGATATCATTTTAAAATACATGGACAGGGGTATTACCTCCCTGCGTCCAAGTCCTGGTCCT
ACTTGTTTTATAAGCTATTACTTAACGAGGGACACTAAAACATGGGGGCAGTAATTGTTAAAAG
GCATGACCTAAACAAATTCCACAAATCTCGCATGCATGTAATAAAATGTATATTTATAACAAAT
TCTAAATTTTCCAGTAAGGTAAAAATCATATACAACCAAATCAAACATGACAATAAAGAAGCAA
CCTGGATTGTGCCAGAACTTATCGTTTGTCACCTCCCTTATAAGTCGCTCAACAGATGAATCCT
GTACATTGTTTACAAAAGTTTGCTTTTTGGAAATAATAGACCTTTTGCTGGCTGGCTTCTGATC
AGCATTGTTTGTTCCTGTTAGAAATGTTCTTTGGGAAGAGAATGATCGGCTTTTTGGTTGCTTC
AAGTCCATGGATTGCTTGAATGAAGCTTGTCTTTGGACAGGCTGCTGATACCCATCTGAGGCTG
GATCTTCTGCATTCATTTTCTTTGACCGGCCCTGGGTACCCAACTCAGCATCACCATTGGATTC
AGTGTATTGGTCACTAGGATCTGCAGAATTGCTTCGCTCTGATCCCATCATTTCAGGTTGTCTC
TGATCCCTGATTGCTTGCTGACTTTGTTTTTCTGCAGCCTTTTCACCAGCACCACGAGAAGCTT
CCTTCACTGTACGTGTAACAATCGGTGCTGGAAAAGATGACTGCCTCCTGGGTGTTGATGTCTT
CATTGTACCAGCTTGTTTCGCATCCTCTACATTGATGAAGACAGTTTGCCTAGCTCGTTTTTTG
CCTAACATGGCCTCTTTGTGTTCATTTAACTTGGGCCTCTTTGCGGGGTTGCTCGCAAACCTCA
AAGCATAATTGGCTTCGACTCCTTTAACATCCCTTGACCTGTTGCAAAGATCTAGATCATCACC
AGGCTGATTTCCTTTACATTCAGAATTTTGCATGTTATCTGATCCTGTGGACCCGTGAACCCGA
TCTTCAGATGCATCAACCTTTTCAGCATCACTACATTCCGCAGCAGTATCATCTTTAGTCACAT
CACCAGATTTAATAAGATGGGGCTCGCTCTCTTGGGATTCTTTCTTCAAATTAGTGCTTGCGGT
ACCAGTGAACTCATCTTTGTTGCTACTCCCTGCATTTTCAGAAATGCCATCTGCATCAGACCAT
TCTCCTTCTTCTCTTTCAATGGCTTGTGACACCTTATTGCAAGTCTCAACCTTTGAAGCAGCAC
TGTCGGTGATCTGATTGTTTACCATGGACAGTGATGCTATACTAGAATTATGATTATCTTCCAC
CTTCATCGGCTCCTTTGTATTGTTTGAATCTTTGCTGTTCCTCACAAAAGGCTGAAATCCAGAA
CCAATGGATGCATGCTTAAAGGCATTATTGTTCAATATCCCCTGCGACTGTGATCCTTCCCCTC
GCTGAAACAAGGTTGGGGCATATGTCGTCGGAACACGAAGGGATTTCTGAGGTTGTGACACGAC
AACAGCAGCTTCTTGTAACGCCACAACAACAGCTTCTTGTGGTACGACAGCAGCAGATTCTTTT
GGCACAACAGCAGCAGATTCTTTTGGCACGACAGCAGCTGCTGCTTCTTCAACTTCTGCTGGGA
GTTCGTTAAGGTCAAATAACATCCTTCCTCGAGAACCCATGTCATGTGTAGATGCATATAGATT
GAATCTTTCAACTAGTGGAACCAGTAGCAATTTCCGGGAATATTAAGGCACCCAATGGAGGGAA
GTTATTGTTGCCTTTCTGTCGGGACAAGCAT
						
					

			
		

Sequences
Splice junction sequence	AGATTGAATCTTTCAACTAGTGGAACCAGTAGCAATTTCCGGGAATATTAAGGCACCCAATGGA GGGAAGTTATTGTTGCCTTTCTGTCGGGACAAGCATctgttagaatcaaatgaatcaccaagat aaaaatggataatagctccaataggatcacgtgtatcaataggcatgtggcgcctaacagtacc aacaagcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 2020 Transcript exons: 42056974-42057142,42057231-42057326,42057414-42057602,42 058063-42059628 CTGTTAGAATCAAATGAATCACCAAGATAAAAATGGATAATAGCTCCAATAGGATCACGTGTAT CAATAGGCATGTGGCGCCTAACAGTACCAACAAGCCGGCCACATTCTGATACAGCATCCTCATT TGAACCCATAGCTCTCCTACTAGATCGGCCTGATTGTGCAGCTGAACCAGGCCGTGGAAACGAT AGAATAGCAACATCGCCTTCTTTGAAATTCCATTTTTGTTCATGGATCGGTAGAACGACAACAT CGTACCATCCTCTTTCACGTCTATCGACAGTTTTTACTCGGACCGCTACATGTGCATCCCTTCC CACAGCCTCAAGACTCTCCTCATACGAACTATAAAGCTGAGCTCTGCATTCCTCAAAAAGCAAA GGCTCAAAAACTCTAATGTACTCCTCAGCAGATTCAAAGCTTCCAGGAACACACTCAAGTTCTG CCTCCTCTGGATTGTGCCAGAACTTATCGTTTGTCACCTCCCTTATAAGTCGCTCAACAGATGA ATCCTGTACATTGTTTACAAAAGTTTGCTTTTTGGAAATAATAGACCTTTTGCTGGCTGGCTTC TGATCAGCATTGTTTGTTCCTGTTAGAAATGTTCTTTGGGAAGAGAATGATCGGCTTTTTGGTT GCTTCAAGTCCATGGATTGCTTGAATGAAGCTTGTCTTTGGACAGGCTGCTGATACCCATCTGA GGCTGGATCTTCTGCATTCATTTTCTTTGACCGGCCCTGGGTACCCAACTCAGCATCACCATTG GATTCAGTGTATTGGTCACTAGGATCTGCAGAATTGCTTCGCTCTGATCCCATCATTTCAGGTT GTCTCTGATCCCTGATTGCTTGCTGACTTTGTTTTTCTGCAGCCTTTTCACCAGCACCACGAGA AGCTTCCTTCACTGTACGTGTAACAATCGGTGCTGGAAAAGATGACTGCCTCCTGGGTGTTGAT GTCTTCATTGTACCAGCTTGTTTCGCATCCTCTACATTGATGAAGACAGTTTGCCTAGCTCGTT TTTTGCCTAACATGGCCTCTTTGTGTTCATTTAACTTGGGCCTCTTTGCGGGGTTGCTCGCAAA CCTCAAAGCATAATTGGCTTCGACTCCTTTAACATCCCTTGACCTGTTGCAAAGATCTAGATCA TCACCAGGCTGATTTCCTTTACATTCAGAATTTTGCATGTTATCTGATCCTGTGGACCCGTGAA CCCGATCTTCAGATGCATCAACCTTTTCAGCATCACTACATTCCGCAGCAGTATCATCTTTAGT CACATCACCAGATTTAATAAGATGGGGCTCGCTCTCTTGGGATTCTTTCTTCAAATTAGTGCTT GCGGTACCAGTGAACTCATCTTTGTTGCTACTCCCTGCATTTTCAGAAATGCCATCTGCATCAG ACCATTCTCCTTCTTCTCTTTCAATGGCTTGTGACACCTTATTGCAAGTCTCAACCTTTGAAGC AGCACTGTCGGTGATCTGATTGTTTACCATGGACAGTGATGCTATACTAGAATTATGATTATCT TCCACCTTCATCGGCTCCTTTGTATTGTTTGAATCTTTGCTGTTCCTCACAAAAGGCTGAAATC CAGAACCAATGGATGCATGCTTAAAGGCATTATTGTTCAATATCCCCTGCGACTGTGATCCTTC CCCTCGCTGAAACAAGGTTGGGGCATATGTCGTCGGAACACGAAGGGATTTCTGAGGTTGTGAC ACGACAACAGCAGCTTCTTGTAACGCCACAACAACAGCTTCTTGTGGTACGACAGCAGCAGATT CTTTTGGCACAACAGCAGCAGATTCTTTTGGCACGACAGCAGCTGCTGCTTCTTCAACTTCTGC TGGGAGTTCGTTAAGGTCAAATAACATCCTTCCTCGAGAACCCATGTCATGTGTAGATGCATAT AGATTGAATCTTTCAACTAGTGGAACCAGTAGCAATTTCCGGGAATATTAAGGCACCCAATGGA GGGAAGTTATTGTTGCCTTTCTGTCGGGACAAGCAT
Genomic sequence	CTGTTAGAATCAAATGAATCACCAAGATAAAAATGGATAATAGCTCCAATAGGATCACGTGTAT CAATAGGCATGTGGCGCCTAACAGTACCAACAAGCCGGCCACATTCTGATACAGCATCCTCATT TGAACCCATAGCTCTCCTACTAGATCGGCCTGATTGTGCAGCTGAAAATACCAACACAACAGCT AACTAAGAAAAACGTCTATCGACAGTTATTGCAAATAAAAAACTAAGACAATTCAGTAAATATA CCTGAACCAGGCCGTGGAAACGATAGAATAGCAACATCGCCTTCTTTGAAATTCCATTTTTGTT CATGGATCGGTAGAACGACAACATCGTACCATCCTGGATGCATTAATATTCAGGTTACTGCACT GATTGGGGTATTCAACTTCGTGTTCTATAAAAGCGCAACAAACCAATCCCACATACCTCTTTCA CGTCTATCGACAGTTTTTACTCGGACCGCTACATGTGCATCCCTTCCCACAGCCTCAAGACTCT CCTCATACGAACTATAAAGCTGAGCTCTGCATTCCTCAAAAAGCAAAGGCTCAAAAACTCTAAT GTACTCCTCAGCAGATTCAAAGCTTCCAGGAACACACTCAAGTTCTGCCTCCTCTGTTCAGATA AAGAAATATATGTTATTTATATGCCAAATTACAACCACACACACATGCAAACACAATAGTGATT TTACAACTTCTGGAATGGAACAAGATAACATCAAATATGTGATCATTAGTGAGAAACACAATGA CCAAAATATCAACAATCTTCAGTACAGAGCAAGTGGCGAAGTGTAACATGGAGCTGCCACATTT TTAAGATATCATTTTAAAATACATGGACAGGGGTATTACCTCCCTGCGTCCAAGTCCTGGTCCT ACTTGTTTTATAAGCTATTACTTAACGAGGGACACTAAAACATGGGGGCAGTAATTGTTAAAAG GCATGACCTAAACAAATTCCACAAATCTCGCATGCATGTAATAAAATGTATATTTATAACAAAT TCTAAATTTTCCAGTAAGGTAAAAATCATATACAACCAAATCAAACATGACAATAAAGAAGCAA CCTGGATTGTGCCAGAACTTATCGTTTGTCACCTCCCTTATAAGTCGCTCAACAGATGAATCCT GTACATTGTTTACAAAAGTTTGCTTTTTGGAAATAATAGACCTTTTGCTGGCTGGCTTCTGATC AGCATTGTTTGTTCCTGTTAGAAATGTTCTTTGGGAAGAGAATGATCGGCTTTTTGGTTGCTTC AAGTCCATGGATTGCTTGAATGAAGCTTGTCTTTGGACAGGCTGCTGATACCCATCTGAGGCTG GATCTTCTGCATTCATTTTCTTTGACCGGCCCTGGGTACCCAACTCAGCATCACCATTGGATTC AGTGTATTGGTCACTAGGATCTGCAGAATTGCTTCGCTCTGATCCCATCATTTCAGGTTGTCTC TGATCCCTGATTGCTTGCTGACTTTGTTTTTCTGCAGCCTTTTCACCAGCACCACGAGAAGCTT CCTTCACTGTACGTGTAACAATCGGTGCTGGAAAAGATGACTGCCTCCTGGGTGTTGATGTCTT CATTGTACCAGCTTGTTTCGCATCCTCTACATTGATGAAGACAGTTTGCCTAGCTCGTTTTTTG CCTAACATGGCCTCTTTGTGTTCATTTAACTTGGGCCTCTTTGCGGGGTTGCTCGCAAACCTCA AAGCATAATTGGCTTCGACTCCTTTAACATCCCTTGACCTGTTGCAAAGATCTAGATCATCACC AGGCTGATTTCCTTTACATTCAGAATTTTGCATGTTATCTGATCCTGTGGACCCGTGAACCCGA TCTTCAGATGCATCAACCTTTTCAGCATCACTACATTCCGCAGCAGTATCATCTTTAGTCACAT CACCAGATTTAATAAGATGGGGCTCGCTCTCTTGGGATTCTTTCTTCAAATTAGTGCTTGCGGT ACCAGTGAACTCATCTTTGTTGCTACTCCCTGCATTTTCAGAAATGCCATCTGCATCAGACCAT TCTCCTTCTTCTCTTTCAATGGCTTGTGACACCTTATTGCAAGTCTCAACCTTTGAAGCAGCAC TGTCGGTGATCTGATTGTTTACCATGGACAGTGATGCTATACTAGAATTATGATTATCTTCCAC CTTCATCGGCTCCTTTGTATTGTTTGAATCTTTGCTGTTCCTCACAAAAGGCTGAAATCCAGAA CCAATGGATGCATGCTTAAAGGCATTATTGTTCAATATCCCCTGCGACTGTGATCCTTCCCCTC GCTGAAACAAGGTTGGGGCATATGTCGTCGGAACACGAAGGGATTTCTGAGGTTGTGACACGAC AACAGCAGCTTCTTGTAACGCCACAACAACAGCTTCTTGTGGTACGACAGCAGCAGATTCTTTT GGCACAACAGCAGCAGATTCTTTTGGCACGACAGCAGCTGCTGCTTCTTCAACTTCTGCTGGGA GTTCGTTAAGGTCAAATAACATCCTTCCTCGAGAACCCATGTCATGTGTAGATGCATATAGATT GAATCTTTCAACTAGTGGAACCAGTAGCAATTTCCGGGAATATTAAGGCACCCAATGGAGGGAA GTTATTGTTGCCTTTCTGTCGGGACAAGCAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.240042909

Conservation Information
Conserved circRNAs	NA
PMCS	0.240042909

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							42057319-42059578(-)
42059511-42059543(-)
						
						Potential amino acid sequence
						
							MLSFYRSMNKNGISKKAMLLFYRFHGLVQLHNQADLVGELWVQMRMLYQNVAGLLVLLGATCLL
IHVILLELLSIFILVIHLILTDACPDRKATITSLHWVP*(-)
MGSRGRMLFDLNELPAEVEEAAAAVVPKESAAVVPKESAAVVPQEAVVVALQEAAVVVSQPQKS
LRVPTTYAPTLFQRGEGSQSQGILNNNAFKHASIGSGFQPFVRNSKDSNNTKEPMKVEDNHNSS
IASLSMVNNQITDSAASKVETCNKVSQAIEREEGEWSDADGISENAGSSNKDEFTGTASTNLKK
ESQESEPHLIKSGDVTKDDTAAECSDAEKVDASEDRVHGSTGSDNMQNSECKGNQPGDDLDLCN
RSRDVKGVEANYALRFASNPAKRPKLNEHKEAMLGKKRARQTVFINVEDAKQAGTMKTSTPRRQ
SSFPAPIVTRTVKEASRGAGEKAAEKQSQQAIRDQRQPEMMGSERSNSADPSDQYTESNGDAEL
GTQGRSKKMNAEDPASDGYQQPVQRQASFKQSMDLKQPKSRSFSSQRTFLTGTNNADQKPASKR
SIISKKQTFVNNVQDSSVERLIREVTNDKFWHNPEEAELECVPGSFESAEEYIRVFEPLLFEEC
RAQLYSSYEESLEAVGRDAHVAVRVKTVDRRERGWYDVVVLPIHEQKWNFKEGDVAILSFPRPG
SAAQSGRSSRRAMGSNEDAVSECGRLVGTVRRHMPIDTRDPIGAIIHFYLGDSFDSNRCLSRQK
GNNNFPPLGALIFPEIATGSTS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	Y
Potential coding position	42057319-42059578(-) 42059511-42059543(-)
Potential amino acid sequence	MLSFYRSMNKNGISKKAMLLFYRFHGLVQLHNQADLVGELWVQMRMLYQNVAGLLVLLGATCLL IHVILLELLSIFILVIHLILTDACPDRKATITSLHWVP(-) MGSRGRMLFDLNELPAEVEEAAAAVVPKESAAVVPKESAAVVPQEAVVVALQEAAVVVSQPQKS LRVPTTYAPTLFQRGEGSQSQGILNNNAFKHASIGSGFQPFVRNSKDSNNTKEPMKVEDNHNSS IASLSMVNNQITDSAASKVETCNKVSQAIEREEGEWSDADGISENAGSSNKDEFTGTASTNLKK ESQESEPHLIKSGDVTKDDTAAECSDAEKVDASEDRVHGSTGSDNMQNSECKGNQPGDDLDLCN RSRDVKGVEANYALRFASNPAKRPKLNEHKEAMLGKKRARQTVFINVEDAKQAGTMKTSTPRRQ SSFPAPIVTRTVKEASRGAGEKAAEKQSQQAIRDQRQPEMMGSERSNSADPSDQYTESNGDAEL GTQGRSKKMNAEDPASDGYQQPVQRQASFKQSMDLKQPKSRSFSSQRTFLTGTNNADQKPASKR SIISKKQTFVNNVQDSSVERLIREVTNDKFWHNPEEAELECVPGSFESAEEYIRVFEPLLFEEC RAQLYSSYEESLEAVGRDAHVAVRVKTVDRRERGWYDVVVLPIHEQKWNFKEGDVAILSFPRPG SAAQSGRSSRRAMGSNEDAVSECGRLVGTVRRHMPIDTRDPIGAIIHFYLGDSFDSNRCLSRQK GNNNFPPLGALIFPEIATGSTS(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019

circRNA

Detail information of Zm00001d014344_circ_g.3

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