Detail information of BGIOSGA035578_circ_ig.1


General Information
CircRNA Name BGIOSGA035578_circ_ig.1
ID in PlantcircBase osi_circ_003213
Alias 11:19968612|19973603
Organism Oryza sativa ssp. indica
Position chr11: 19968612-19973603  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA035579_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCGTGAAGCAGAGATGGTAAAGAATAATCAAGGTAACCAGTAGGACAAGAAGCAACTTTCAA
GCCCTGTCTACCTCTGCATCTACAGCTGCAATCAAGgcagcagaggtacaagcatgcctgattt
tgtggattaagcttcagatgatactctatttgtgctcccttatataatttttggattcagaagc
cgcgagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAGCAGAGGTACAAGCATGCCTGATTTTGTGGATTAAGCTTCAGATGATACTCTATTTGTGCT
CCCTTATATAATTTTTGGATTCAGAAGCCGCGAGTTTACTCTTCTGTCATCTAAAAACAATTTC
AATTCTTTCTGGGGCAGTAGTAGTAGTTATATGGAAACTATTGATAAATATGTCCAGTGGTCCA
GTTGCTTTGAAATCTTCTGATAACCTGATGGAGTATTTCACAAAACAGAGTGATACTGACACAG
CAATATGGCCAAGTTGGCCTGAAGACTGACGTAGATGCTTCAGCAGCACATGACATGAGTTGCT
CTGGCGTACTGACATCTGGGTCCCCCTTGCCTGCAAGTTCCTCAGCTCTTTAGTCAACGACACT
TTGTTTCCTTCTTCCATCTCCACTTGCCACTTCCTCATTGCCAATTGCAGAGAGGTTTTCACAT
CTCTATGAACTGCTGCTGCTAGCTTGAAGCCACGGGCAGGAAGTCACAGAAGGTAGGTATCAAA
TATCAAGGTGTTGTATATTTTCTTGATTTGTGTCATTAACACAGTTTCTTCAGAGATCTTAACT
TTCAACGTCCTTGTCATCAGCAAGAAAGTGATATTCCAACTGATAATTGCTTTCAACTTCATTG
TGTTTGATTTGTTTCTGCACAGGACTGTCCTCAGGTGCTATACTTTAATGTCATGCTTCTTGTT
AGCCATTAGTCAAACAGCATCAGTGGCTGGCAGTATCGCAGGAAGGTTCATGGTCATTTCAGAC
CACTTGAAGCCAACGACACTGAGGCAACAACGCTGCATTCTTACCCTTCTTCTCCATGCTACTT
TCCCCAAAAAGTCTTCCCCTGCACCATTAATCGCCCATGAGCCAGATTCCAGAACCAGGCCATG
GCCATGGAACAACAGAAGGTATGCACCACTCTGGTCTTTGTCATAAGTTTTGTTCTTAGCTGGT
CTTGATTGTTTGCAATATTCAGAGATTTGAACCTAACACTGTCCTTTGCAATGTAGCAACTAAC
TTATGCTTGGTTAACTCAGTGACAATCACAAACCTCCCTTAGTTTCTGAGCTGGTCCGCCGGAG
CTTCACTGTGTACAAGAACACCACATGAGATGGAAAGAATCATGGTGAGTGCTGCCACAGGGGT
GATGAACTCGCTCCTTACGAAGCTCACTGTGCTGCTGGGCGAGGAGTACAAGCTGCAGAAGCGA
GTAAAGCACGGGATCGAATGCCTGAAAGATGAGCTGAGCAGCATGAATGCTTTGCTTGAGAAGC
TGGCCGACATGGATGTTCTTGACCCACAGATGAAGGATTGGAGGAACCAAGTGAGGGAGATGGC
CTACGACATCGAGGACTGCATCGATCGATATATGCTCCAGCTACATGATGAGCCGGACAAACGA
GCTGGTATGAAGGGTTTGTTTCGCAACACAATTAAGAAAGTGAAAAAGCTGGGAGCTCGGCATG
AAATCGGCAAGCAGATCAAAGAGTTAAGGACTCACATTGACGAGGCCAGCCAACGGCGTTATAG
GTACAAGCTTGATGCGATTCTTGATTCCTGTAGCACATGTGCCGTGGAGACCATCGACCCTCGT
CTATCTGCACTATATGTTGAGGAATCTAGCCTCGTTGGCATAGATGGTCCGATGAATGAACTTA
TCAAGTTGGTGGATGACAGGGAGCAGTCGCTGAAGGTGGTGTCAATTGTGGGTTTTGGAGGATT
AGGTAAAACTACCCTTGCTAAGCAAGTATATAAAAAAGTTGGCGAGCAATTTGACTTCCAGGCT
TTTGTGCTAGTCTCTCAAAAACCTGATGTGCAAAAGATTTTCCGGAACATACTCTCTCAAATTA
AGGATTTAGGGAATGAATCTAGAGAAGTGGGCTGGCTCATTGATGAACTCAGGATTTTCCTCAA
GGACAAACGGTAAGCCATTTGTTACTCGTATACTGAAAGTAATTCTAGTCTTCACACTTCCTTT
TTTTCTTATATCATTTCACACTACGTAGGATGCAAATTGTCAGACTTGAAACATTAGTTTGAGC
TACCAGTACAGTTATGTGTCTTACTTTTCGTATTTACCTCCTGCATATATTTAATCAATAAGAT
TCATGGGCTTTTTGCATCTTAGGTGCAGCAATTGGGTTATCCATTATCTTAAAAAATTCAATAA
GGTTCACTTGAATCATAGTCTCTCTTTTTGGTAGGTATTTTGTCGTAATTGATGATATATGGAG
CACCCAAGCATGGAATATTATTAAATGTGCCTTGCCTGAGAATACTTATGGTTGTAGGATCCTA
TTGACAACAAGAAATGGTAATGTTGCCAAAACATGTTGCTATCCTCAAAATGATACTGTATATG
AGATAAGGCCACTAACTGAAGCTGATTCCAAAGGCTTATTCTTTAGAAGAATTTTTGGCTCCGA
AGACCGATGTCCGATTCACCTTAGAGATGTCTCAGTTGAAATCATTGATAAGTGTGGTGGACTT
CCTCTGGCATTAATTACCATTGCTAGTTTATTGAATGTTAAATCAAAAAACAGAGAGGAGTGGC
TGAACATTCGGAATTCGATTGGTTTAGGACTTGAGGAAAATAGCGACATTGATGACATGAAAAG
GATATTGTCCCTTAGTTACAGTGATCTTCCACACCATTTAAAGACATGCTTGTTATATTTAAGC
ATGTATCCAGAAGATTGTCAGATCAATGTGGACCATTTGTTAAGGAGGTGGAGAGCAGAAGGGT
TCATAAAGGTAAGATGTGGGAGAAACTTAATGGAGGAAGGAGAATTCTATTTAAATGAACTTAT
GAATAGAAGTTTGATCCAACCAGAACATAGGAGAATTGATGGTCGAGCAATGACTTGTCGTGTG
CATGATATTATTCTTGATCTCATTGTATCCAAGGCAGTTGAAGAAAACTTTGTTACTGTTGTTA
GTGATCCAAGTATTTTAGTGTCCCAAGATAAAATTCGCCGACTATTACTTGTCTACTGTGGCCG
AGAAAATGTCATGACAATGCCTTCCATGGCAAGTGCTAATGTTAGATCACTTGGCATATTTGGA
TATTCGGAACAGATGCTTCCTATTTCTGACTTGCATGCTCTCAGAGTGCTCGATATAGATGCAG
GTAATAAGATGATGGAGATTTGTGACATTAGGAAGCTACTTCAGTTGCGGTACCTTCGGATTCT
GTCACCTACACATCTTCCTGAACAAATAGGGGAACTGCAGTTTTTGGAAACACTGGATCTATTT
GATACTTGTGGTATAGTGAAACTGCCTGCAAGTATTGTTAAACCGCGACAGTTGAAATGTTTGT
CCGCTGATTGTGCAATGCTGCCAGATGGAGTCGGGAACATGCAAGCTCTAGAGGAACTATCAGT
AGTAATTGTGGACGAGAGCTCAATGAATTTTCTGCAAGAGTTGGGAAGTTTGATCAAACTAAGA
AGACTTGGTCTACGGTGGTACATTCCTGATGACGACTATAACAGATCAACATATGGATATACCT
TAGCTTTATCGCTCGGCAAACTCCTTAGTTCCAATCTTAGATATTTGCAAATTTTGGGCCCGCG
GACTGGCGCTATCCCTTTGGATTTTTTGTCTTCGTCCTATCATCTCATGCAGGAATTATACATT
TATCCTTGTCTTCTCCACGGGAATCCTGAGAGGCTGGTGTCACTGGCCAGCGTCACCAGCCTGA
CAATTAGGATCCAGCAAGTGACACAAGAAACCCTTGAGATCCTTGGGGACTTCTCTGCCTTGCT
ATCTCTGACGTTAACGTCGGAAGATGAAACCACAGAAAGGCTTAGTGTATACAGCAACAAATTT
GGATGTCTGAAGTATCTCCACTTGGGGTATTTGGCCAACGGTGTGATGTTCCATGCTGGAGCCA
TGCCAAAGCTCGAAACCATCGATTTTATGATCAAGGCACATTCTTCGCAGTCTGCATGTAGCCA
TCAAAATCTGGGCATTCACCACCTCTCAGCCCTTAAGGTCCTCAATGTCAATATTGATTATGAT
TGCGAGGAGGCAATGGTTGAGGAGGTGGAAGCGCTTGAGGCTGCCATCAAGAATGAAGCCAGCC
TACTTCCTAACTGCTCCTCACAACACATCGACAGAATTTCCAGGCAAGTTGAGATGGTAACAGA
AGGATGGTTGGAAGGGGACGATGTGATGATGGAGCAACAAGATGAGATGCCCAGTCCGCAGTTG
CTGGAATTACAATCAGCTGATTAAGTACGGTAATCACAAACTAGTACTTTACTCTATTGCATGC
AGCTGAACTGGTGCCTAAGCATGGTAATTAAGTACCGCTCACTGATTGAATGCATTGGAGTGAC
GGTAATCTCCGTCCAGAAATAATGTCACTCTAGAATTCATAGAGGACACATTAATTCTACTTGT
AGTAAAATAATGCAAGTAGAGAGCACCGGAGCGTTGCTCTTCCTTGTGTGATGGGTTGCAGTTA
CGGTAATGTTGGCACAATCGCTCACTACTTGGTTTTAACCTGTTTCTGAACCTGTGAATGTGCA
AATATTGATTGAAAATGTGCCCATGTTTGGTGTCTTTGTGTGCAACTCCTTGGCCCTTCAATTT
TGCATAGGGCTTGACTTAAAATGTTGAATTGGACTTGATATAAACTCTTATCTCATGTTTCCAT
AGTTAGAACTGCATTTTATTTACAATATACAACTCTTAGCACATGAGGCACGAATTGAATGTGG
ATTTGGTCCTCCTAATATCGATATCTGCCACCTCTTTGCCCTCAAGAACCTCATCATTAATAGT
GTGCAAGAGTTGAAGAGGTGGAGGCATTAGAGGCTGCTATCCGGAGTGCAGCCAGTATGCTTCC
CACCTATCCTACACCAACTTTAAACAGATTTCGTGAAGCAGAGATGGTAAAGAATAATCAAGGT
AACCAGTAGGACAAGAAGCAACTTTCAAGCCCTGTCTACCTCTGCATCTACAGCTGCAATCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021