Detail information of AT2G04410_circ_g.3


General Information
CircRNA Name AT2G04410_circ_g.3
ID in PlantcircBase ath_circ_012785
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1534206-1535083  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method circRNA_finder, CIRI-full
Parent gene AT2G04410
Parent gene annotation RPM1-interacting protein 4 (RIN4) family protein
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues aerial
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G04410.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAGATTGAACAAGATGGAGACAAAAAGAGAGGGAGGGAGAGAGATCGTACTGCCATGGATTAA
GGAAGAGCTGAGATGCGTTGTGGTGGTGGTCGTCGTctcctttcttctcgtttctagctttgtt
gaagataacagtaaacccctcagctgatgaagggtcattaacatcccattcgccaaacttcggc
aacgggcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 158
Transcript exons: 1534206-1535083
CTCCTTTCTTCTCGTTTCTAGCTTTGTTGAAGATAACAGTAAACCCCTCAGCTGATGAAGGGTC
ATTAACATCCCATTCGCCAAACTTCGGCAACGGGCGGCCCTTGTCTGCCATGGATTAAGGAAGA
GCTGAGATGCGTTGTGGTGGTGGTCGTCGT

Genomic sequence CTCCTTTCTTCTCGTTTCTAGCTTTGTTGAAGATAACAGTAAACCCCTCAGCTGATGAAGGGTC
ATTAACATCCCATTCGCCAAACTTCGGCAACGGGCGGCCCTTGTCCTAGACACAATCCAAACAT
TTCAATTCACCCGAGTGAGTTCTAAAAGATGATACTCAAGGTTGTCTTCTATGATTAAACTGTA
TCTATGTCCAACACAATAACTCGTAACAAAACATATACATGCAAAAGTTTCAGTAAAGCAAGAA
GCTATATATGCAAAAGTATTGAAATCCAGAAGATGATATGCAAAGACAACAACTACACCATTCT
TCTCATTAGCCCTATCCACTGTTCAAGATGTTACTAAGACTTTCTCTTTGTCTATTCACTAATT
TAGAATTAGCCAATTACAAGAGCAGAGCCATTATGAAAGATTAAAAACCAACACTTTCTCAACA
CCAAAATCTTGAAACTAAAAGTATTGATTTTTCCAACAGTAACTGAAAATCTATACAAAACATA
TAAACTTTTGTAAGATCAAGACAAGGAAGCTCCATTTCCTACAAGCAAAAACCAAGTCAAAATA
TTTCACATACGAATAAATCCAAAAGAATAAAGGACCACAAAGAAAAAACGAGAGAAATGATCAA
TCTCGAAGCAAATCCAGGCGAACAACCAAAAGAAAAGAATCAAACTTTAACAATTCCACCAAAA
ATAAGAAACCACAGAAACATCAAAATCAAAAGATGTGAAACTAGAAACAGAAGAAACAGGAAAT
ATCAAGATTCATAGATTGAACAAGATGGAGACAAAAAGAGAGGGAGGGAGAGAGATCGTACTGC
CATGGATTAAGGAAGAGCTGAGATGCGTTGTGGTGGTGGTCGTCGT
Conservation Information
Conserved circRNAs NA
PMCS 0.119308732
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017