Detail information of AT4G21070_circ_g.3


General Information
CircRNA Name AT4G21070_circ_g.3
ID in PlantcircBase ath_circ_031936
Alias NA
Organism Arabidpsis thaliana
Position chr4: 11250042-11252241  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT4G21070
Parent gene annotation Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
Parent gene strand +
Alternative splicing AT4G21070_circ_g.1 AT4G21070_circ_g.2
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT4G21070.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATACAAAATATGTAAGCGAGGAGCCATATGAGATCACTATGGATGTTCATGGAATACGAGAA
GGACCTTATCTTGGAAGACAAAGAGCTTTGAAAAAGgtcctaggtagagatgagattgatctta
ctcaaaagaagctacctaaagttaaagttgcatcatccaaatgtaaaaaccgcaaagcaggaag
tgcaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCCTAGGTAGAGATGAGATTGATCTTACTCAAAAGAAGCTACCTAAAGTTAAAGTTGCATCAT
CCAAATGTAAAAACCGCAAAGCAGGAAGTGCAAGAAATACAGTTGCTAGACGAAGCATTGGGGT
TTCACAAGAGGACAACATGGAATCATCTGCAGCAGCAACCATTAGTGAGCAACAAGATAGTCGT
GGGACTTCTGGCACAATTATCAGGAATGATGTGAATACTGATGAAAATGTGAAAGCTAAAAGAG
CTACAAGAAGCAAGGCTCAGAGTACACGAGTTCAGTCTGATCTAAATGTATCCAATGAAGCTGA
TGGGAAGCAGGGGACAAAGAGGAAAAGATCTAGCATTAAATCCTCTCCAGCTCACCCAATCGCA
GGACCTAATGAGCTCTCACTTGGAACAGAAATTGTGGGAAAGGGGGATCAGGATCAAGCCCATG
GTCCATCTGATACACATCCTGAAAAACGAAGTCCCACCGAGAAACCCTCTCTGAAGAAGAGGGG
AAGAAAATCCAATGCAAGCTCCTCTTTAAAAGATCTATCTGGAAAAACACAAAAGAAGACTTCA
GAGAAGAAATTGAAACTAGATTCCCATATGATCTCAAGCAAAGCTACACAACCGCATGGAAATG
GTATTCTAACTGCTGGGTTGAATCAAGGGGGTGATAAACAAGATTCAAGAAACAATAGGAAATC
CACTGTGGGTAAAGACGATCATACCATGCAAGTTATAGAGAAATGCTCAACGATAAACAAGTCT
TCATCTGGAGGCAGTGCACATTTGCGACGATGTAATGGATCTTTAACGAAGAAATTCACATGTG
CCTTTTGTCAGTGTTCAGAAGACACAGAGGTTGAATTCACTATCTCACATTGGAGTCCTAGATG
TAGCCCTTTGTTGACTTTTATCATATTATTAATTGGAATGTTATATGAACAGGCTTCAGGAGAA
ATGACTCACTACTACAGAGGTGAACCTGTCTCTGCGGATTTTAATGGTGGGTCTAAGGTCATAC
ATGTTCACAAAAACTGTGCTGAATGGTAAGAAATCTGGATAGTAATTATCCGCTCATGCCTTTT
GACATCATTTAAAATGCTTGAATGACACATGTGCTTCTGATACACCACTGACTGAACGTAAAAA
ACTGTTTTGCATTTTTCAGGGCTCCAAATGTATACTTCAACGACCTTACCATAGTGAATCTTGA
TGTGGAGTTGACAAGAAGCCGGAGAATAAGTTGCAGCTGCTGTGGGCTTAAAGGCGCAGCACTT
GGTTGTTACAATAAGAGTTGCAAGAATAGTTTTCATGTTACGTGTGCAAAACTCATACCAGAAT
GCAGATGGGACAATGTAAGTGTTGCATATATTGTAGAAGCTCTATATAGTCCCTTACACAGTTC
TTTTAACACATTTTCTTATCAACAGGTAAAATTTGTAATGCTATGCCCTTTGGATGCATCCATT
AAGTTGCCCTGTGAAGAGGCTAATTCAAAAGACAGGAAATGCAAGCGTACTCCTAAAGAGTATG
CAATTTTATCTACTGATAAGGATTATGATGTGATTCCAATATTTGAAATTAGACAGCTGACAAT
AGATCATTGTTTTCTCTAGACCACTGCACTCTCAGCCTAAACAAGTATCTGGAAAAGCTAACAT
CCGTGAGCTCCATATCAAGCAGTTCCATGGATTTTCCAAGAAATTGGTCTTATCTTGCTCAGGG
CTCACAGTTGAAGAGAAGGTATGGATATATCTACTCTTTTACTATATGCAACACTCGAGCTGAA
ACTTGTATTTGATGGATGGCTTTGATTGCAGACTGTTATTGCAGAATTTGCGGAACTGTCTGGA
GTTACGATCTCAAAAAACTGGGATTCAACTGTTACACATGTTATTGCATCAATCAATGAAAACG
GAGCCTGCAAAAGGACCCTCAAATTCATGATGGCAATCTTGGAGGGGAAATGGATACTAACCAT
TGATTGTCAGTATTCTTAACCCATTAGCAACGAAACATATATGTTTGCAATCTGACAATCAACA
AATTGTCTAAGTGTTGTCTATCTTTTCTTGCAGGGATTAAGGCGTGTATGAAAAATACAAAATA
TGTAAGCGAGGAGCCATATGAGATCACTATGGATGTTCATGGAATACGAGAAGGACCTTATCTT
GGAAGACAAAGAGCTTTGAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.133913716
Functional Information
Coding potential Y
Potential coding position 11250186-11252238(+)
Potential amino acid sequence MESSAAATISEQQDSRGTSGTIIRNDVNTDENVKAKRATRSKAQSTRVQSDLNVSNEADGKQGT
KRKRSSIKSSPAHPIAGPNELSLGTEIVGKGDQDQAHGPSDTHPEKRSPTEKPSLKKRGRKSNA
SSSLKDLSGKTQKKTSEKKLKLDSHMISSKATQPHGNGILTAGLNQGGDKQDSRNNRKSTVGKD
DHTMQVIEKCSTINKSSSGGSAHLRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSAD
FNGGSKVIHVHKNCAEWAPNVYFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSF
HVTCAKLIPECRWDNVKFVMLCPLDASIKLPCEEANSKDRKCKRTPKEPLHSQPKQVSGKANIR
ELHIKQFHGFSKKLVLSCSGLTVEEKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRT
LKFMMAILEGKWILTIDWIKACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKVLGRDEI
DLTQKKLPKVKVASSKCKNRKAGSARNTVARRSIGVSQEDNMESSAAATISEQQDSRGTSGTII
RNDVNTDENVKAKRATRSKAQSTRVQSDLNVSNEADGKQGTKRKRSSIKSSPAHPIAGPNELSL
GTEIVGKGDQDQAHGPSDTHPEKRSPTEKPSLKKRGRKSNASSSLKDLSGKTQKKTSEKKLKLD
SHMISSKATQPHGNGILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQVIEKCSTINKSSSGGSAH
LRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEWAPNVYF
NDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKLIPECRWDNVKFVMLCP
LDASIKLPCEEANSKDRKCKRTPKEPLHSQPKQVSGKANIRELHIKQFHGFSKKLVLSCSGLTV
EEKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIKACM
KNTKYVSEEPYEITMDVHGIREGPYLGRQRALKKVLGRDEIDLTQKKLPKVKVASSKCKNRKAG
SARNTVARRSIGVSQEDNMESSAAATISEQQDSRGTSGTIIRNDVNTDENVKAKRATRSKAQST
RVQSDLNVSNEADGKQGTKRKRSSIKSSPAHPIAGPNELSLGTEIVGKGDQDQAHGPSDTHPEK
RSPTEKPSLKKRGRKSNASSSLKDLSGKTQKKTSEKKLKLDSHMISSKATQPHGNGILTAGLNQ
GGDKQDSRNNRKSTVGKDDHTMQVIEKCSTINKSSSGGSAHLRRCNGSLTKKFTCAFCQCSEDT
EASGEMTHYYRGEPVSADFNGGSKVIHVHKNCAEWAPNVYFNDLTIVNLDVELTRSRRISCSCC
GLKGAALGCYNKSCKNSFHVTCAKLIPECRWDNVKFVMLCPLDASIKLPCEEANSKDRKCKRTP
KEPLHSQPKQVSGKANIRELHIKQFHGFSKKLVLSCSGLTVEEKTVIAEFAELSGVTISKNWDS
TVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIKACMKNTKYVSEEPYEITMDVHGIREG
PYLGRQRALKKVLGRDEIDLTQKKLPKVKVASSKCKNRKAGSARNTVARRSIGVSQEDNMESSA
AATISEQQDSRGTSGTIIRNDVNTDENVKAKRATRSKAQSTRVQSDLNVSNEADGKQGTKRKRS
SIKSSPAHPIAGPNELSLGTEIVGKGDQDQAHGPSDTHPEKRSPTEKPSLKKRGRKSNASSSLK
DLSGKTQKKTSEKKLKLDSHMISSKATQPHGNGILTAGLNQGGDKQDSRNNRKSTVGKDDHTMQ
VIEKCSTINKSSSGGSAHLRRCNGSLTKKFTCAFCQCSEDTEASGEMTHYYRGEPVSADFNGGS
KVIHVHKNCAEWAPNVYFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCA
KLIPECRWDNVKFVMLCPLDASIKLPCEEANSKDRKCKRTPKEPLHSQPKQVSGKANIRELHIK
QFHGFSKKLVLSCSGLTVEEKTVIAEFAELSGVTISKNWDSTVTHVIASINENGACKRTLKFMM
AILEGKWILTIDWIKACMKNTKYVSEEPYEITMDVHGIREGPYLGRQRALKK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017