Plant Circular RNA Database

Detail information of Os01g0678500_circ_g.8

			
						 General Information
					
						CircRNA Name
						Os01g0678500_circ_g.8
					
						ID in PlantcircBase
						osa_circ_003224
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 27915181-27919453  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os01g0678500						
					
						Parent gene annotation
						
							Voltage-gated Ca2+ channel  protein, Elicitor-induced defense re
ponses, Hypersensitive cell death, Activation of MAPK cascade (O
s01t0678500-01);Voltage-gated Ca2+ channel  protein, Elicitor-in
duced defense reponses, Hypersensitive cell death, Activation of
 MAPK cascade (Os01t0678500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os01g0678500_circ_g.3 Os01g0678500_circ_g.4 Os01g0678500_circ_g.5 Os01g0678500_circ_g.6 Os01g0678500_circ_g.7 Os01g0678500_circ_g.9 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0678500-02:9
Os01t0678500-01:9

General Information
CircRNA Name	Os01g0678500_circ_g.8
ID in PlantcircBase	osa_circ_003224
Alias	NA
Organism	Oryza sativa
Position	chr1: 27915181-27919453 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os01g0678500
Parent gene annotation	Voltage-gated Ca2+ channel protein, Elicitor-induced defense re ponses, Hypersensitive cell death, Activation of MAPK cascade (O s01t0678500-01);Voltage-gated Ca2+ channel protein, Elicitor-in duced defense reponses, Hypersensitive cell death, Activation of MAPK cascade (Os01t0678500-02)
Parent gene strand	-
Alternative splicing	Os01g0678500_circ_g.3 Os01g0678500_circ_g.4 Os01g0678500_circ_g.5 Os01g0678500_circ_g.6 Os01g0678500_circ_g.7 Os01g0678500_circ_g.9
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0678500-02:9 Os01t0678500-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAGCCAATCCAACCGGAGATACACAAAATAGAATCTCATAGCCCTCTCAAACCTTGTGTCATT
CAAGACATCCTCAGGGATACCCACACCATCTTCTGCctgtatttgttgagctcatctagtaatg
ataggcactgttctttgttgagataaccctgaccctgatgtccacagatagggaagaaagggat
atcagcag

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 932
Transcript exons: 27915181-27915242,27915665-27915742,27915866-27915971,27
916059-27916225,27916703-27916763,27917946-27918055,2791
8575-27918670,27919096-27919203,27919310-27919453
CTGTATTTGTTGAGCTCATCTAGTAATGATAGGCACTGTTCTTTGTTGAGATAACCCTGACCAG
TAGCATCAATGATACCAAATGCCTTCTCTAGTATACTTTTCCTTGTACAGTCTGCCTGAGAAAC
TTGCTTTGCTAGCTGCTCCTTAAAGCTATCATAAATGACAGCAAGAATTAAATTTGTTAGGAAG
TAAACTCCCAAAAGTACGTAGACAATAAAAAATAGTGAGGACCAACGAGAGCTCTTATAAGCAG
GAACCCATACATCAGGATTATTGGAGGTGGTGAAGAGAATAAACATCTGATATAACGTGGTACC
ATATGACGAGAAAACAGTCTTTCCTTGTGGTGTATCCTCAAATGTTACATAAGCTAGCCAGCTT
GCGAATAAGAGGAACAATAGTGAAAGGGCCAAAACATTAAGGTATGTCCCAACCATACCAACCA
GTGTAACAGCACACATTCGCAGTTCCCTGATATTCATTATTAGAAACGCAACACGGATGTAAGG
AGCTACTCTGAAAGGTTGGGGACTAAATGCAAACACCAGTATGTCACATGCTAAGATGAAGAGA
AGAAGAACCTTCAGTTTATTTATTGTGTTCTTCCAGAATAGGTTTAAACCTTCATAGGACAGTG
GATAGAAGATATCCATTACAAGAATAACAAGTGTGAGCCCCTCATATATGAGAGATTCAGTTTT
GCTCAAGTATGGCAACTGCCCCAGAAAGTAAAGATCCCTTTGATCACAAGCATGTTGAGAATAT
CCCCGGCACCAGAGAGGCTTCTCGAGAAAATTCAAAAGAATCAAAGCAAATAGGTTAAGTGACC
ACAGCCAATCCAACCGGAGATACACAAAATAGAATCTCATAGCCCTCTCAAACCTTGTGTCATT
CAAGACATCCTCAGGGATACCCACACCATCTTCTGC
						
					

						Genomic sequence
						
							CTGTATTTGTTGAGCTCATCTAGTAATGATAGGCACTGTTCTTTGTTGAGATAACCCTGACCCT
GATGTCCACAGATAGGGAAGAAAGGGATATCAGCAGCCAATATTAATAATACTCATGAATAACA
CAGCCAAACAACTAAACACGTCTATATCATCTCAATAGCAGCAGGACCTTGATTTTCTTGCTAA
CTCGTTTTCCCTAATCTAAGATCTATAATATTAATCTCATCACGCCTTGCGAAGGTGAGCTAGT
GCTGCTTATTTGATAATTTGAACATTTAAAATAATCCCAACTGAGAACCGAAGTGATCAGACTA
TACTCTGATGAAGGATAACCTGAACATCAAAGTTATACTAAAGTACTGAAGTACTGCTGAGGTG
CATCAGTTTTCAGGAAAACATAAAAAATACTTGCACTAAAATACGTTGCCAAATTGTGGTGCAC
TAGTTTGCAGGACAACATAAAATGGAAAACACTTACAGTAGCATCAATGATACCAAATGCCTTC
TCTAGTATACTTTTCCTTGTACAGTCTGCCTGAGAAACTTGCTTTGCTAGCTAGATCACAAAAA
ATATGCCATGTTAGCAGTATGTGAAGCATAATAATAATAATAACTCAGAATTCATAACAAAAAA
AAATAGCGATCATCATGTGAATTAGGACAGAGGTGAGGAACCCACCTGCTCCTTAAAGCTATCA
TAAATGACAGCAAGAATTAAATTTGTTAGGAAGTAAACTCCCAAAAGTACGTAGACAATAAAAA
ATAGTGAGGACCAACGAGAGCTCCTGCTCAAAGATGTATAAGGTTAATTTGTATGCATGTCATA
TGCAGGAACTATCATAAACACTTCAGTAATAGTGATGCCTTCTTACTTATAAGCAGGAACCCAT
ACATCAGGATTATTGGAGGTGGTGAAGAGAATAAACATCTGATATAACGTGGTACCATATGACG
AGAAAACAGTCTTTCCTTGTGGTGTATCCTCAAATGTTACATAAGCTAGCCAGCTTGCGAATAA
GAGGAACAATAGTGAAAGGGCCTACATAATGCAAGCGACCAAAAAGATATGCATCAAAACTGAA
CACATAATGTGCACTAATGCAGACATAAATATGAACATGCAGAACCATAAGAAACTCATGGAAA
AGTAAATTGAGGTAAACATCTTTGTAATTAGTATTCCAATAACTAGGCCGTAAAATGTAGTTCA
AAATTGACTTTTATATTGGAAAGCAGAAAGGGCAGAACTCAAGAATGAACAGGATGTCAGAAGA
GAACAATCTCCCCCTCCTTCCCAGCCTACCTAAATCTACAATGGTCCCACACTATTTATAAGTT
GGTGTCCACAATTTCAATTCATGCACCACAAACCATCAGATGAAGAGAGTAACGAAAGGTCCCC
GTGACTCTCAAGCATAGACAAAAACTTCTAATGGCTTATTCTGAAGGAATATAATCATTGTATG
TCCTACAGTGCTAGAAGTATAGTAATTTTGCATAATTAATAAAGTCTTACCAAAACATTAAGGT
ATGTCCCAACCATACCAACCAGTGTAACAGCACACATTCGCAGTTCCCTGTCACAAAAGGAACA
GTTAATACATCTGTCAAACAATCAAAAAAATAACATATATCTTAACTAACATTGACATGTATCT
TTTCCTAAATGGGACAGGTAAGTGTTTGCCTATGTGTCTATGTGAACGCTAATTATAATTATTT
ATGGGTCTTCTCTTTGCTATGCAGTATGATTATCCTGCAGAAATCTAGGTCATCTATCTATCTA
TTATATTATTAAGATAGCATTGAAAGGAGGCACCACGTTCGTTGTGGAGGCTAGAAATTACCAC
ATTAATCGGAGAAAAAGAAAGAAGAGTCCAAGTAGGAATACAATTTTAAAATAACTGAAATTTG
GAATTAAAAATAAGCAATATTAGAAAAAGAGTCCATATAAGAACCCAATACACGATTAATTAAA
ATTTGGAATAAAAAATAAAATAAATTAAGAAATTATTAGAAAAATAAAATAGAGTTCAAATATT
AATACAATTTTGAAACAACTAAAATTTAAAATAAAAAAAAAGTAACATCGAAAGAATAGTCCAT
ATAGAACACAAAACAAGATTAATTAAAATCTAAATAAAAAATAAAATAAATTCAGAAATTATAA
AAAGGAAAATAAGAGTTCAACTAGGAATACAATTATAAATAATTAAAATTCTTAATAAAAAATA
AAGACAATTGAAAGAAGAGACCATCAAGAACACATGACGAGATTAATTAAAATCCGAAGTAACA
AATAAAATAAATTCCAAACATAGAAAAATAATTATAAGAGTTCAAGTAGGAAAACAATTTATAA
ATAAAAAAATATCAGGGTGAAAAATATGGAATTTTCAAAAAAAAAAGTCCATCTAGAACACAAC
GATGACAAATGAGGAGGATGAATAGAAACGGTGGTAAATCGGCAACAAATAAAGGGGTAGCGAC
TAGCGTGACTTCTAAAAAATATAAAATTAGAAACACTTGGATGATAAAGTTCGGTCTTTCAAAG
TCCTAAGACAATGAGTTAGCTATTTAACAAAATTTAAGTAAAATAATATGTAAAAAATAGATAA
TTTTGTATGGGTGCTAGCCGCGCAATTGCGCGGGCCACCCAGCTAGTTTTCTTTGAGATTGATT
CAGTAACGAACCTTCATACTGAATTCAGAAAGCTAGCAGCAGAAACTGTAGTCTAGAGTAGATA
AAACACTGCAAACCTGATATTCATTATTAGAAACGCAACACGGATGTAAGGAGCTACTCTGAAA
GGTTGGGGACTAAATGCAAACACCAGTATGTCACATGCTAAGATGAAGAGAAGAAGAACCTACA
AGACAAAGCAGAAATATGGATAGACCACAGTTTGTGAAGCAGTAAGAAAGACACATTTTTAGAG
AGAAACATATGCTTAATTAAAGTAAAACAACAGGATTACAGTCTGTTTGCAGCGTAGGAATTAA
AAGGGGCAGAGTTAGCACAATGGGTAGTCTAGTTAAAACAAGGAAGTTTATTTAGCTTGAATGT
AACTGTATCAAAAATTGGAAGGGCCTAGTCAAATCTAACAAAAAAAATAGCCATCCCTCATACG
TAAAAGCACATAGTTAATTTACAAAAAGTAGTTAAATATGTGAATGTTCACTCACATATGCCTT
CAAATTTTAGATTTTATCTCAGTAGGGCCAGATGTAATCCACATCATCCATTATTTTTTGCAGT
TACATAGTTTTATTTAACTTCAGTTTATACTTGTATGCTATCCACATCAATGGATCTTAGAAAA
ACAAACATGTATGCTATTCTTGCTATTTATACTCATATATATCTATTTTATAAACAGATGCCAT
ACCTTCAGTTTATTTATTGTGTTCTTCCAGAATAGGTTTAAACCTTCATAGGACAGTGGATAGA
AGATATCCATTACAAGAATAACAAGTGTGAGCCCCTGAAATTGAAAAGAACGGCAAGTTTGCGT
CAAATATATCAGATTAATGTTTTCAGTCCTCAATACAGACCATTACATGTTCGTTAAAAAAAGC
ATGTGCATTATCCTGTTATACAACAAATAACCATACAAAATCTAGAATGATGGAATTCAGATTT
TAATGTACTCAAATGACCATGCTCTGGCCCAACTAACTATGCAATACATCTCAAAGCTCAACAA
TAATATTGAGAAGCTGTGATTAGTATAGTCACCAAAGGTTGCTTTAATGGTCACCAACAAAGTT
GAGTGTAATTACAAAAGCAAATTATTGACCTGACTTTCCAACTGCTCATTAATCTACTACCGAC
TGTAGTTTTTGAAGTTTTCTGCAATTAAAGTTTTCAGAGAACATAGAAACACCACTCTTATAGA
CAAAGCCTTACCTCATATATGAGAGATTCAGTTTTGCTCAAGTATGGCAACTGCCCCAGAAAGT
AAAGATCCCTTTGATCACAAGCATGTTGAGAATATCCCCGGCACCAGAGAGGCTTCTGAAATGC
AAAAGAAACAACTCAAAACATGACCATAATGGGACTTGCAGGATTTTAGCCGCTTTCCTGTACA
ATGTAATAGATGGGTTCCATTTTCATAACTAACCTCGAGAAAATTCAAAAGAATCAAAGCAAAT
AGGTTAAGTGACCACAGCCAATCCAACCGGAGATACACAAAATAGAATCTCATAGCCCTCTCAA
ACCTTGTGTCATTCAAGACATCCTCAGGGATACCCACACCATCTTCTGC
						
					

			
		

Sequences
Splice junction sequence	ACAGCCAATCCAACCGGAGATACACAAAATAGAATCTCATAGCCCTCTCAAACCTTGTGTCATT CAAGACATCCTCAGGGATACCCACACCATCTTCTGCctgtatttgttgagctcatctagtaatg ataggcactgttctttgttgagataaccctgaccctgatgtccacagatagggaagaaagggat atcagcag
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 932 Transcript exons: 27915181-27915242,27915665-27915742,27915866-27915971,27 916059-27916225,27916703-27916763,27917946-27918055,2791 8575-27918670,27919096-27919203,27919310-27919453 CTGTATTTGTTGAGCTCATCTAGTAATGATAGGCACTGTTCTTTGTTGAGATAACCCTGACCAG TAGCATCAATGATACCAAATGCCTTCTCTAGTATACTTTTCCTTGTACAGTCTGCCTGAGAAAC TTGCTTTGCTAGCTGCTCCTTAAAGCTATCATAAATGACAGCAAGAATTAAATTTGTTAGGAAG TAAACTCCCAAAAGTACGTAGACAATAAAAAATAGTGAGGACCAACGAGAGCTCTTATAAGCAG GAACCCATACATCAGGATTATTGGAGGTGGTGAAGAGAATAAACATCTGATATAACGTGGTACC ATATGACGAGAAAACAGTCTTTCCTTGTGGTGTATCCTCAAATGTTACATAAGCTAGCCAGCTT GCGAATAAGAGGAACAATAGTGAAAGGGCCAAAACATTAAGGTATGTCCCAACCATACCAACCA GTGTAACAGCACACATTCGCAGTTCCCTGATATTCATTATTAGAAACGCAACACGGATGTAAGG AGCTACTCTGAAAGGTTGGGGACTAAATGCAAACACCAGTATGTCACATGCTAAGATGAAGAGA AGAAGAACCTTCAGTTTATTTATTGTGTTCTTCCAGAATAGGTTTAAACCTTCATAGGACAGTG GATAGAAGATATCCATTACAAGAATAACAAGTGTGAGCCCCTCATATATGAGAGATTCAGTTTT GCTCAAGTATGGCAACTGCCCCAGAAAGTAAAGATCCCTTTGATCACAAGCATGTTGAGAATAT CCCCGGCACCAGAGAGGCTTCTCGAGAAAATTCAAAAGAATCAAAGCAAATAGGTTAAGTGACC ACAGCCAATCCAACCGGAGATACACAAAATAGAATCTCATAGCCCTCTCAAACCTTGTGTCATT CAAGACATCCTCAGGGATACCCACACCATCTTCTGC
Genomic sequence	CTGTATTTGTTGAGCTCATCTAGTAATGATAGGCACTGTTCTTTGTTGAGATAACCCTGACCCT GATGTCCACAGATAGGGAAGAAAGGGATATCAGCAGCCAATATTAATAATACTCATGAATAACA CAGCCAAACAACTAAACACGTCTATATCATCTCAATAGCAGCAGGACCTTGATTTTCTTGCTAA CTCGTTTTCCCTAATCTAAGATCTATAATATTAATCTCATCACGCCTTGCGAAGGTGAGCTAGT GCTGCTTATTTGATAATTTGAACATTTAAAATAATCCCAACTGAGAACCGAAGTGATCAGACTA TACTCTGATGAAGGATAACCTGAACATCAAAGTTATACTAAAGTACTGAAGTACTGCTGAGGTG CATCAGTTTTCAGGAAAACATAAAAAATACTTGCACTAAAATACGTTGCCAAATTGTGGTGCAC TAGTTTGCAGGACAACATAAAATGGAAAACACTTACAGTAGCATCAATGATACCAAATGCCTTC TCTAGTATACTTTTCCTTGTACAGTCTGCCTGAGAAACTTGCTTTGCTAGCTAGATCACAAAAA ATATGCCATGTTAGCAGTATGTGAAGCATAATAATAATAATAACTCAGAATTCATAACAAAAAA AAATAGCGATCATCATGTGAATTAGGACAGAGGTGAGGAACCCACCTGCTCCTTAAAGCTATCA TAAATGACAGCAAGAATTAAATTTGTTAGGAAGTAAACTCCCAAAAGTACGTAGACAATAAAAA ATAGTGAGGACCAACGAGAGCTCCTGCTCAAAGATGTATAAGGTTAATTTGTATGCATGTCATA TGCAGGAACTATCATAAACACTTCAGTAATAGTGATGCCTTCTTACTTATAAGCAGGAACCCAT ACATCAGGATTATTGGAGGTGGTGAAGAGAATAAACATCTGATATAACGTGGTACCATATGACG AGAAAACAGTCTTTCCTTGTGGTGTATCCTCAAATGTTACATAAGCTAGCCAGCTTGCGAATAA GAGGAACAATAGTGAAAGGGCCTACATAATGCAAGCGACCAAAAAGATATGCATCAAAACTGAA CACATAATGTGCACTAATGCAGACATAAATATGAACATGCAGAACCATAAGAAACTCATGGAAA AGTAAATTGAGGTAAACATCTTTGTAATTAGTATTCCAATAACTAGGCCGTAAAATGTAGTTCA AAATTGACTTTTATATTGGAAAGCAGAAAGGGCAGAACTCAAGAATGAACAGGATGTCAGAAGA GAACAATCTCCCCCTCCTTCCCAGCCTACCTAAATCTACAATGGTCCCACACTATTTATAAGTT GGTGTCCACAATTTCAATTCATGCACCACAAACCATCAGATGAAGAGAGTAACGAAAGGTCCCC GTGACTCTCAAGCATAGACAAAAACTTCTAATGGCTTATTCTGAAGGAATATAATCATTGTATG TCCTACAGTGCTAGAAGTATAGTAATTTTGCATAATTAATAAAGTCTTACCAAAACATTAAGGT ATGTCCCAACCATACCAACCAGTGTAACAGCACACATTCGCAGTTCCCTGTCACAAAAGGAACA GTTAATACATCTGTCAAACAATCAAAAAAATAACATATATCTTAACTAACATTGACATGTATCT TTTCCTAAATGGGACAGGTAAGTGTTTGCCTATGTGTCTATGTGAACGCTAATTATAATTATTT ATGGGTCTTCTCTTTGCTATGCAGTATGATTATCCTGCAGAAATCTAGGTCATCTATCTATCTA TTATATTATTAAGATAGCATTGAAAGGAGGCACCACGTTCGTTGTGGAGGCTAGAAATTACCAC ATTAATCGGAGAAAAAGAAAGAAGAGTCCAAGTAGGAATACAATTTTAAAATAACTGAAATTTG GAATTAAAAATAAGCAATATTAGAAAAAGAGTCCATATAAGAACCCAATACACGATTAATTAAA ATTTGGAATAAAAAATAAAATAAATTAAGAAATTATTAGAAAAATAAAATAGAGTTCAAATATT AATACAATTTTGAAACAACTAAAATTTAAAATAAAAAAAAAGTAACATCGAAAGAATAGTCCAT ATAGAACACAAAACAAGATTAATTAAAATCTAAATAAAAAATAAAATAAATTCAGAAATTATAA AAAGGAAAATAAGAGTTCAACTAGGAATACAATTATAAATAATTAAAATTCTTAATAAAAAATA AAGACAATTGAAAGAAGAGACCATCAAGAACACATGACGAGATTAATTAAAATCCGAAGTAACA AATAAAATAAATTCCAAACATAGAAAAATAATTATAAGAGTTCAAGTAGGAAAACAATTTATAA ATAAAAAAATATCAGGGTGAAAAATATGGAATTTTCAAAAAAAAAAGTCCATCTAGAACACAAC GATGACAAATGAGGAGGATGAATAGAAACGGTGGTAAATCGGCAACAAATAAAGGGGTAGCGAC TAGCGTGACTTCTAAAAAATATAAAATTAGAAACACTTGGATGATAAAGTTCGGTCTTTCAAAG TCCTAAGACAATGAGTTAGCTATTTAACAAAATTTAAGTAAAATAATATGTAAAAAATAGATAA TTTTGTATGGGTGCTAGCCGCGCAATTGCGCGGGCCACCCAGCTAGTTTTCTTTGAGATTGATT CAGTAACGAACCTTCATACTGAATTCAGAAAGCTAGCAGCAGAAACTGTAGTCTAGAGTAGATA AAACACTGCAAACCTGATATTCATTATTAGAAACGCAACACGGATGTAAGGAGCTACTCTGAAA GGTTGGGGACTAAATGCAAACACCAGTATGTCACATGCTAAGATGAAGAGAAGAAGAACCTACA AGACAAAGCAGAAATATGGATAGACCACAGTTTGTGAAGCAGTAAGAAAGACACATTTTTAGAG AGAAACATATGCTTAATTAAAGTAAAACAACAGGATTACAGTCTGTTTGCAGCGTAGGAATTAA AAGGGGCAGAGTTAGCACAATGGGTAGTCTAGTTAAAACAAGGAAGTTTATTTAGCTTGAATGT AACTGTATCAAAAATTGGAAGGGCCTAGTCAAATCTAACAAAAAAAATAGCCATCCCTCATACG TAAAAGCACATAGTTAATTTACAAAAAGTAGTTAAATATGTGAATGTTCACTCACATATGCCTT CAAATTTTAGATTTTATCTCAGTAGGGCCAGATGTAATCCACATCATCCATTATTTTTTGCAGT TACATAGTTTTATTTAACTTCAGTTTATACTTGTATGCTATCCACATCAATGGATCTTAGAAAA ACAAACATGTATGCTATTCTTGCTATTTATACTCATATATATCTATTTTATAAACAGATGCCAT ACCTTCAGTTTATTTATTGTGTTCTTCCAGAATAGGTTTAAACCTTCATAGGACAGTGGATAGA AGATATCCATTACAAGAATAACAAGTGTGAGCCCCTGAAATTGAAAAGAACGGCAAGTTTGCGT CAAATATATCAGATTAATGTTTTCAGTCCTCAATACAGACCATTACATGTTCGTTAAAAAAAGC ATGTGCATTATCCTGTTATACAACAAATAACCATACAAAATCTAGAATGATGGAATTCAGATTT TAATGTACTCAAATGACCATGCTCTGGCCCAACTAACTATGCAATACATCTCAAAGCTCAACAA TAATATTGAGAAGCTGTGATTAGTATAGTCACCAAAGGTTGCTTTAATGGTCACCAACAAAGTT GAGTGTAATTACAAAAGCAAATTATTGACCTGACTTTCCAACTGCTCATTAATCTACTACCGAC TGTAGTTTTTGAAGTTTTCTGCAATTAAAGTTTTCAGAGAACATAGAAACACCACTCTTATAGA CAAAGCCTTACCTCATATATGAGAGATTCAGTTTTGCTCAAGTATGGCAACTGCCCCAGAAAGT AAAGATCCCTTTGATCACAAGCATGTTGAGAATATCCCCGGCACCAGAGAGGCTTCTGAAATGC AAAAGAAACAACTCAAAACATGACCATAATGGGACTTGCAGGATTTTAGCCGCTTTCCTGTACA ATGTAATAGATGGGTTCCATTTTCATAACTAACCTCGAGAAAATTCAAAAGAATCAAAGCAAAT AGGTTAAGTGACCACAGCCAATCCAACCGGAGATACACAAAATAGAATCTCATAGCCCTCTCAA ACCTTGTGTCATTCAAGACATCCTCAGGGATACCCACACCATCTTCTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.31430558

Conservation Information
Conserved circRNAs	NA
PMCS	0.31430558

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							27919395-27919419(-)
						
						Potential amino acid sequence
						
							MRFYFVYLRLDWLWSLNLFALILLNFLEKPLWCRGYSQHACDQRDLYFLGQLPYLSKTESLIYE
GLTLVILVMDIFYPLSYEGLNLFWKNTINKLKVLLLFILACDILVFAFSPQPFRVAPYIRVAFL
IMNIRELRMCAVTLVGMVGTYLNVLALSLLFLLFASWLAYVTFEDTPQGKTVFSSYGTTLYQMF
ILFTTSNNPDVWVPAYKSSRWSSLFFIVYVLLGVYFLTNLILAVIYDSFKEQLAKQVSQADCTR
KSILEKAFGIIDATGQGYLNKEQCLSLLDELNKYRQKMVWVSLRMS*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	27919395-27919419(-)
Potential amino acid sequence	MRFYFVYLRLDWLWSLNLFALILLNFLEKPLWCRGYSQHACDQRDLYFLGQLPYLSKTESLIYE GLTLVILVMDIFYPLSYEGLNLFWKNTINKLKVLLLFILACDILVFAFSPQPFRVAPYIRVAFL IMNIRELRMCAVTLVGMVGTYLNVLALSLLFLLFASWLAYVTFEDTPQGKTVFSSYGTTLYQMF ILFTTSNNPDVWVPAYKSSRWSSLFFIVYVLLGVYFLTNLILAVIYDSFKEQLAKQVSQADCTR KSILEKAFGIIDATGQGYLNKEQCLSLLDELNKYRQKMVWVSLRMS*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os01g0678500_circ_g.8

Address

Any questions?

Supported by