Detail information of 1_circ_igg.4


General Information
CircRNA Name 1_circ_igg.4
ID in PlantcircBase ath_circ_006702
Alias At_ciR268
Organism Arabidpsis thaliana
Position chr1: 18718736-18723571  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.5 1_circ_igg.6
Support reads 16/41
Tissues leaf/aerial, inflorescences
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCAGGCGTGAATTTTATTTGCTGTTCCAATTCCGAAACAGCATTCAGCCGCCGGAAATCTTAT
CGAATCAGCAACACAGCGTGCTCTTACAGAAGAAAGggaacaaaacgttactggaaatgcagaa
actccattcttacttgcacgggtaaatgagttaaccggaggcacatcacttgcagcaagtatcc
ttctttag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAACAAAACGTTACTGGAAATGCAGAAACTCCATTCTTACTTGCACGGGTAAATGAGTTAACC
GGAGGCACATCACTTGCAGCAAGTATCCTTCTTTAGAGGTTCCCTTAATCATTAATATTCCACC
AAATTACTTTAAATAGTTCAGATTTTTTCTTATCTGTATCCAAAATCCGAATCCTTTCCGTGGC
TTAACAGTAGCGTAGCAATGTCTCAGCATTGTAAAACCTTGAGTTCCTTTACACATTTCCAGAC
ATTGCGCTTGTGAAAAACAATGCCCTTATCGGTTCTCAGATTGCAGTAGCCCTTTCTCAGCTGA
TGTGAGCTTCCTTATCAATCCCAGACTCAAGCTCAAGCGCAAGTTATTCAGGTTCATGATTCAG
GACAGATCAAAGATGTTTTGGATTGGTAGTTATCAATTTATATTGGTTATCAAAGATTTTTCTT
TAGCTAAAGAAACTCGTTAACTTATTATCACATGTTATATATTAGTCATTAGATTTATATCATG
TGGTACCCTTAAAGATTAAACTATTGAAATTTTAATTTATATCACAAAGGATCTCAAGGAAAGA
TCTGATCTCAAGGATGTAATAATAAAATTGTTCTGCTTCATTTAACCCTCTCTTCAGTTTTGGA
CAACAATGGCAGCAATCACCGTTGACTTTCAGCTCTGCTTCATCTTCATCCTCCTAGGAATCTT
CTCACTCTTCTGTCTCTCTGCTTTCTTCTTCAAGAAACCAAAAGACCCACAACTTCAAGGCTGT
GGTCTACCTCCGAGCCCACCCTCTCTACCGGTCATAGGTCATCTTCACCTTCTCCTCTCTGTTC
CATGTCTCAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCCTCCTTCACCTTCGTGCATT
CAATATCCCAATAGTTATAGTCTCTTCCGGCTCCATGGCCAACGAAGTTTTGAGGACCCAAGAC
CTGAACTTTGCTACCCGTCAACGTGAGGTTTCTATAATGGAAAAATCATTACTTTTTGGATCTT
TTGGCTTTGTCTCAGCTCCTTATGGAGATTACTGGAGATTCATGAAGAAGCTCTTAGTCACAAA
CCTTTTCGGGTCTCATTCCCTCGAGCAGACACGGCTCATTCGTGAGAAAGAACTCAAGACTTTC
CGTACTATGTTGTTCGATAAGGCGGCAAAGAAGGGGACAGTTGATGTTGGTAAAGAGATGATGA
AGCTAACGAATAACAGCATTTGCAGGATGATAATGGGGAGGAGGTGTTCAGAGGAGAACAGTGA
AGCAGAGAAAGTCGAAGACTTGGTGATCAAATCATTTAGTTTGGTGAAGAAGGTCCTTATAGCT
AACACGGTTGGTCGACTTCTCAAGAAGTTTGGGATCTCTCTGTTTGAGAAGGAAATCATGGAGG
TCTCGCAGAGGTACGATGAATTGCTGGAAAAAATTATTAAAGAACACGAAGAGGATCCGAACAA
GAAAGAGGATAGAGACATGATGGATGTTCTGTTGGAAGTTTGTGCAGACGACAAGGCTGAGGTT
AAGATTACCAGGAACCAAATCAAAGCGCTTATTGTGGTAATGTCTTGAGTTTCTTTCTTGGTTT
TCTTCAATGACTGTCGCATAAGGATCATGCAATGTCTTTATATCGTGCATGTGGTTGTAGGAGC
TTTTCCTTGGAGGCACTGATACTTCAGCACAAACAATACAGTGGATAATGGCCGAACTCATTAA
CCATCCCGAGATTCTTAAAATATTAAGAGAAGAGATAGAATCTGTTGTCGGAACAACGAGGTTT
ATTCAAGAAACAGATCTCTCAAACCTGCCGTATTTGCAGGCTGTGATGAAAGAAGGACAAAGAC
TACACCCACATTCGCCAATGTTGGTGAGGAATGCAACCAAAGGATGCAAGATTGGAGGGTACTA
CATACCGCAGAACACAACGATGCTAATAAACACCTATGCGATGATGATAGATCCAGATTCATGG
GAAAATCCAGACAAGTTTCAGCCCGAGAGGTTCATGGTGTCTCCTTCAAAAGGGAAAGACGATG
AGAGAGAACAGCTAGCTTTGAACTTCATTCCTTTCGGGAGCGGAAGAAGAGCATGTCCAGGAGA
AAAATTGGGCTATCTCTTCACTGGAGTAGCCATTGGAACAATGGTACAGTGTTTTGACTGGATA
ATCGATGGAGATAAGGTTAACGTGGAAGAGGCTGGAGAAATGACGCTGACCATGGCTCATCCAC
TTAAATGCACTCCTGTGACTCGAGTTAACCCATTAGCTAGCTTTGAATCTGAAGATCCTAAGTG
GTTGATGGAGGAGTTTGATATGTATTGTTGAAGTTGCAGACATATGTCTGAAACTAATAATGGA
ACATGCTGTCTTTGTTTTTTCATATGGAGTTTGATCACTAATATTGTTGTTTCATAACAGAACT
TGTTGTCTTTATGTATTTCTGCTGTTTCACAACAGAACTTGTCTTTATGTATTTCTGCTGTTTC
ACAACAGAACTTGTTGTCTTTGTTGCCCATGTCTACGCTAATTTCGTTAGCACAATGCACACTA
ACATGGAACACATACCGTAGTATAGACCTCACCGTGGGGGTTAATCTAGAATCAAGCAGCTGAG
AAACAATACCATTGTATGAGGTAGTAGTAAACTGACCCTGTAACAAACCTTGTGCCATATTTCC
AAAAGGTTTGATCTGAGACAAATAAGAACACTCGAAAAATAAATGGTCTCTAGCACTCTGCAAA
AAACACACGAAGTGTCGACATTCCCATTCCATAAGCTCATCCTATCCCCCGTTGTAAGACGATT
GTGCATTTCCAACCACACTCAGAAGGAAACTTCCGTCCTTACCTCTCCAAAGCGCAATGTCTGG
CTCTGTACTTTCAATAACTGCAGACTGGATGCTGTTTACTTCCACAAAGCCGGTTTCAGAGCTT
GCAAACTCATCAGAATCAAAACAAGTAGTGGAAAAGTATTTAAACACCATTTGATTGTCTTTGG
ATCCAAAAACATTTTATATATCATGTGGTTCCTTGAAGATTAAACTATTGAATTACTAATTTAT
ATAATCTCAAGGAAAGATCTGATCTCAAGGATATGTATATAGTAAAACTGTTCTGCTTCATCTA
ACTCTCTTTTCAATTCTTGGACAGCAATGGCAGCAATCACCATTTACTTTCAGCTCTGCTTCAT
CTTCATCCTCCTAGGTATCTTCTCACTCTTCTGTCTCTCTGCTTTTTTCTTCAAGAAACCAAAA
GAGCCACTACTCCAAGACTGTGGTCTACCACCGAGCCCACCATCTATACCGGTCATAGGTCATC
TTCACCTTCTCCTCTCTGTTCCATGTCACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCC
CCTCCTTCACCTCCGCGCTTTCAATATCCCAATAGTTCTAGTCTAGTCGGGCTCCATGGCCAAC
GAAGTTTTGAGGATCCAAGACCTGAACTTTGCTAGCCGTGATAGCGGGCAGACTCCTATAATGG
AAAAATCATTACTTTTTGGATCTTTTGGCTTTGTCTCAGTTCCTTATGGAGATTACTGGAGATT
CATGAAGAAGCTCTTAGTCAAAAAACTTCTCGGGTCTCATTCCCTCGAGCAGACACGGCTCCTC
CGTGGGAAAGAACTCCAAACTTTCCGTGCTATGTTGTTTGATAAGGCGACAAAGAATGAGACTG
TTGACGTTGGTAAAGAGATGATGAAGCTAACGAATAACAGCATTTGCAGGATGACAATGGGGAG
GAGCTGTTCAGAGGAGAACGATGAAGCAGAGCAAGTCAGGGGTTTGGTGACCAAATCACTTAGT
TTGACGAAGAAGTTCCTCATAGCTAGCATTGTTGGTCACTTTTCCAAGCTGGTCGGGATCTCTC
TTTTTGGGAAGGAAATCAAGGAGCACTCGCAGAGGTTTGATGAATTGCTGGAGAAGATTATTAA
GGAACACGAAAAGGATCCGAACAATGGAGAGGATAGAGACATGATGGATGTTCTACTGGAAGTT
TGTGCAGATGACAACGCCGAGTTTAAGATTTCCAGGAACCAAATCAAAGCACTTTTTGTGGTAA
TGTCTTGAGTTTCTTCTGCTCAATCTAGAATCTCGAATCTCCAGAATCATCTTTCACCTCTTGA
AGCAAATTCACAACAAGGTTGATATATAAAAGATCGGGATCCCAGCTTTTTTGAATTTCCAATT
TATCTAGTCTTTTTCCAATCTTTTTTTACTTTCTCTTACAACTGGTTTGAAGCAGCTCAGGAGT
CTGGTCAAGATTTCTCCCCAAGTATGTTTTTTTTTTTTAATGTGGTTACATATTTTATGGTTAT
CAATTAAGCAGCCTAATCACAGTACATGTGAGTGAGCATCTTCGAGAAACTGATGTTGAAATGG
CTTATGAGTTACCAAACAATGAACTAGGAGATTCCCTCCAATGTTGCTCTGGATACTGGAACAT
ATGGTCCTCGTAACGACACAGAGGAACTCCCTGTAAGGTGCAAAATTGTTCATTAGCACTGAAC
TCAATCACTTTACTTCTGCTGTGGATGATATATTGACTTCTTTAGGCACCTTCCCGTGTAAAAT
AGCCCTGAAGACCGTGCTAGTCTTTCTCCCAAAATTTCCTCTTTTTAAAAAGTATTTTTGCACT
TTGATCCCTTACCACCTTGAGACAGACCCGCTTTTTCCATATGCAAACATGAAACGAAAAAACC
GTCAGGCGTGAATTTTATTTGCTGTTCCAATTCCGAAACAGCATTCAGCCGCCGGAAATCTTAT
CGAATCAGCAACACAGCGTGCTCTTACAGAAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.592572164
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017