Detail information of Os07g0200000_circ_g.2


General Information
CircRNA Name Os07g0200000_circ_g.2
ID in PlantcircBase osa_circ_033126
Alias NA
Organism Oryza sativa
Position chr7: 5421249-5425228  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os07g0200000
Parent gene annotation Vps51/Vps67 domain containing protein. (Os07t0200000-01);Similar
to predicted protein. (Os07t0200000-02)
Parent gene strand -
Alternative splicing Os07g0200000_circ_g.1 Os07g0200000_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0200000-01:5
Os07t0200000-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTGATAAATGCAGCATAATTTGCATATACACTTCTGCGCATCTCTTCAGCTGAAGCCTTCTT
TAGATCTTGCAGGTAAGAACATAAATGCCTTATCTCctgtcagggttcattccagtagctgaaa
atgcagccattgctctatcaataatatccaatatgacttgatggacgtgcctagacaagaatcg
accttgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTCAGGGTTCATTCCAGTAGCTGAAAATGCAGCCATTGCTCTATCAATAATATCCAATATGA
CTTGATGGACGTGCCTAGACAAGAATCGACCTTGTCCAAAGATAATTACAAATTGCATATCCAG
GTAGAACTGCAGATAAGGGATGAAAAATGAAAATCACAGCTGATAGCATGAAAGGAGAAGAAGA
AGAAAGGAGCTTTACTTGCTGAAGGCCAAGGGGACCCAAAGGCTTCGGTCCCTGTTCAATCTCT
TCCCAGAAGGCTTGATCCTCTGAGAGCCATAGTATGACTGTCTCAGTGAGTCGCATCATTAGCA
GAGTAGCAAATCTTTCTCTGCCGACAAACATATCTGCCGCAATACTGGCCATCCTATTTAGCTT
TGCATACAGCTCCTGCAATGAATAGCAGATCAGCTACAAAATACTACTTTTGGGCAAGTTCTAG
AATCCTAATATCTACATTGATTCAGAGAGCCATCATCATGAAGAATAACATTTTAGTACAGCTT
ATATCTAATAATATGAACTGACAGTCACAAACAAAGATGCCATTTAATTCCATTGGTTAATTAC
AACATCGTCCTGTTATATCACCACAAAACTGAGTAAGACTATTACGAGCTTATCCAAGCAATTA
TGGTAGAAGATATCAAAATCATCTCAAATCTAGAATTTAACACGTCATCACTGAGGTGCTGTTT
CAAGCAGAGAATATTGTGAATACACATGTGAGTAATCGTTTTTCTCCTGGGAGATACATGGACA
AATTCTAAAAGCAGAAAGATTTATGTGGCAAAAGATAAGCGTATGGATGTAAACAAGCTGTTCA
AAAGGTGGTCACAAGGACCTGGGTTAATCTATGTAGGAAAGAAAAAGAAAAAAAAAAGAAAAGT
TCTCATTTGTTTGTACCTGGAAAATAAGAGATGGGGCCCATTCTGGCTCTTCAACAGTATTGTC
CATGCTAATATACATGTCTGCACTGAGATGGGTCTCACCTTCATCTGTAAATATAAGTTCAAGA
GCATGCTGCCTGCAGAAACTATCCCTTAATCTGTCCACCATGCGTTGTAATTTCCGTTTCCATT
CACGTTGCTCAGGCATACGGTTCTGTTTATCTGAGCCTCTTTTACGCAGATCATCCATACTAGA
ATGGTTCATTGATGATAGCTTCATAGCTGCTCTAGGTAGCAACTCCTCAGCTAGCAAAGACGCA
TTGGCTAATAAAGCCAGTTGCTGTTCTTCAGACTCTGCCATTCTAACAATCTTATTTCCTAAAC
CATCTATGTTAGCTTCATCTTCCATTGACCCAGGTAAAGCACTTATGAGCAAATTGACATATGA
ATTGAAAATTTTAGTTATGTCATCCATTGTAGAACCACCTAATTGCAAGCTAAGCAGCGGCGCA
ACATCTTCAAAGAACTCCTGCAAATTACATGCAATACCAAGATTGAGGACACAGTGTATATTAC
ACCAGAAAGGGTAAAGATACTGGTTAAGCGTCACTCCAAAAGAAGCTGAATGCAACGGAAGTAG
TTCATGTTAGATATCTCCTATATGCATAAGTATAGATGCAAATGCCTATTTTTAAGAATAACTT
GTCACCTGACTAATCCAATTTTCCAAGTTCCAACCCATGAAAGCACAAATAAACCATTGAATTA
AACAACCCCAAGCTCACACAAATTAGTATAGTTATCATTGATGGTGTCAAGTCAAACTAGCAAA
TCCTAGGTGTGTGTCAATCTCCTTGAGAAGTCCTCTTCAATCATGAATCATCGAAAGTACTGCA
CCCTAACAGTCTGAAACTGGTTTTGCGAATGAAGGAATTCCACACGAACTCGGCAGGGAATAAT
ACAATCCCAACAGGATTCCTATGAAATCCCTATGCTCCAACAGGATTTCTCTTCCATAAGTTCT
CATTTGTAAAGGCTATATTTCCTACGATCCGATGGGCACAAGTCACATATCTTACTACATCATG
GAACTGATAATGGAGCTAAAGTTATGAAGAATGCTTGAGAGTTAAGATTTTGGGAAAAGGACAT
TATGGCCATGGTAATTTTTAGCCTTAGTTTTTTGCAGATTATTTACCAGATTGTTGAAACAGAT
TATTTACTCCAAGCTTTGAAAATTACATTTTCTCAAAGAAAATTCTTCTATTGTATTTGCTTAG
ACTACTTGTTTTAAGTTATTTGTTAAGGTTATTTATCAGAATATTTGATTTATCCATATAATCA
AATAGATGATCTGCTCAATAATCTGTTTCAAACTAAACCTAGTCCAGCAAACAAATACATGCAA
TTAAATGATGCAGATACAAGCTCATAGAGATATATCACCATCACTTTGCTGAACAAGAAAAATA
GTAAGATCAATTAGTATTGTTCAACCATAAGGGATAAAACCATTACCTGAACCATCGAGTTAAA
ACGATGAGCACTGTTGGAGAGCTTTGGCTGAAGAGCCAAATTAGCAGCAGATGATCTAGCTAAA
GGACGAATGCCAGTTGGGGGATATGTGAGAATCCAGTCATCAGCTGCAGCTAGTGCAGCGGTAC
TCTCTTCAATTCTTCTGATGTTTGAATATAATGCTTGCTCTAGACTGGGCCTGAATTGCCTCAG
AAGAACAGCTGCAACAGACAGACCACGAGCTTCCAACAAGGAGCAATGACCAAGTGATATCTGA
ACACATTCGGCAGCTGCTCTCAAACCTCCAGCAGCTGCACAAGAGGACAACACATGCCTCTTTA
CCAAGAGTGCAAAGGACATAACCTGCTTCGTAGCCCATGTAACCAGTTCAGATGCATAACATGA
CTCATCACCAAAAACTTCTACAGAGTCACTGAGTGCCTGAGCTACCACTGAAAAGACTTGCTGA
GCAAGTGCTGCAGTGTACGCCCCACCATACGAAGTGCTAGATGGATGTATAGTTTGCATATTAC
ATTGAAGCCTTTGATTATGTGCATTGAGTAGCAGGCTGTGAGCTCGAGGGCCATCACCAAGCCT
TTTGAGAGCAGAAGCTGCAGCACGAAGCTCAATGCCACGAGTAGAAGACTGACAAGCAGCTTCA
GCAAGCTGATCTGCCAACTTCTGACGATTATCAGAAACTGCCCTTCTCAAAGCTGCAATTTCAG
TTGCGGTTAGAGTCTGTTTAAGTTTTGCATCAGAAGCAAGTCGTTCCGCTTCATCTAGTGCATC
AAGTGCTTCATCCACTCTTCTCTCAGCTAGCAAAACATCAAGCATGTCAGGGAAATCTGCAGAC
CATTTTTGTATTTCTGAAGGTTCCTGGTCTTCAACATTGGATATATCGTCTTCTGCAGAACCTT
CAGTGTTTGAAGTCAAGGAATCTATTTGAACTCCTTCAGAAAGACCATGGATTAAAGCTGCTTG
TGTATTCAGTAGATTTCTTATTGATAGCAGTTCCCCTTCAAGATCTGATATCTCCTTTGATGTT
CTGGTGACCAAGAGATCATCAGTATCAAAAGATAAGTAGAAACAAATAAATTCTAAGTTAAGGG
GAAGAAAACAGAATGGGTAAAAAATGATTATTTTTTAGAACCAAAGGGCAAAGAACCAGTCCCT
TATTTTAGGAATACAAGACCCTAAACATTGTTACAGCATTCTAAGTCACAAGTAGTTCACAGCC
TGAAACTCCCACTTCTTGGTTTGTAACCAAACTCACACATCAGAAAAACAAACAAAAATACACA
GCAGCACCATGCCTCTGACACCAAAGCTATAAGCCTTACTTAGAAATATTATACCGTATTCACG
TGATAGAGAACTATTAGAGCTTATACCAGGGGTACATCAGGCTATTTAAAAATTGTATCTAACA
CAAAATACTAAGGAAAGTGCACTCTTAAGGTTGTTGACATACCTGATAAATGCAGCATAATTTG
CATATACACTTCTGCGCATCTCTTCAGCTGAAGCCTTCTTTAGATCTTGCAGGTAAGAACATAA
ATGCCTTATCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.158149158
Functional Information
Coding potential Y
Potential coding position 5425139-5421271(+)
5425218-5421314(+)
5425173-5425224(-)
Potential amino acid sequence MQHNLHIHFCASLQLKPSLDLAGKNINALSPVRVHSSS*(+)
MPYLLSGFIPVAENAAIALSIISNMT*(+)
MRRSVYANYAAFIRTSKEISDLEGELLSIRNLLNTQAALIHGLSEGVQIDSLTSNTEGSAEDDI
SNVEDQEPSEIQKWSADFPDMLDVLLAERRVDEALDALDEAERLASDAKLKQTLTATEIAALRR
AVSDNRQKLADQLAEAACQSSTRGIELRAAASALKRLGDGPRAHSLLLNAHNQRLQCNMQTIHP
SSTSYGGAYTAALAQQVFSVVAQALSDSVEVFGDESCYASELVTWATKQVMSFALLVKRHVLSS
CAAAGGLRAAAECVQISLGHCSLLEARGLSVAAVLLRQFRPSLEQALYSNIRRIEESTAALAAA
DDWILTYPPTGIRPLARSSAANLALQPKLSNSAHRFNSMVQEFFEDVAPLLSLQLGGSTMDDIT
KIFNSYVNLLISALPGSMEDEANIDGLGNKIVRMAESEEQQLALLANASLLAEELLPRAAMKLS
SMNHSSMDDLRKRGSDKQNRMPEQREWKRKLQRMVDRLRDSFCRQHALELIFTDEGETHLSADM
YISMDNTVEEPEWAPSLIFQELYAKLNRMASIAADMFVGRERFATLLMMRLTETVILWLSEDQA
FWEEIEQGPKPLGPLGLQQFYLDMQFVIIFGQGRFLSRHVHQVILDIIDRAMAAFSATGMNPDR
R*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017