Plant Circular RNA Database

Detail information of Zm00001d027278_circ_g.1

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d027278_circ_g.1
					

						ID in PlantcircBase
						zma_circ_006337
					

						Alias
						zma_circ_0000281, ZmciR14
					

						Organism
						
							Zea mays						
					

						Position
						
							chr1: 1522358-1524722  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						find_circ, CIRI2
					

						Parent gene
						
							Zm00001d027278						
					

						Parent gene annotation
						
							transcription regulators
							
					

						Parent gene strand
						+
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, root
					

						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d027278_T004:8
Zm00001d027278_T006:8
Zm00001d027278_T013:8
Zm00001d027278_T029:8
Zm00001d027278_T114:8
Zm00001d027278_T057:7
Zm00001d027278_T041:7
Zm00001d027278_T083:7
Zm00001d027278_T119:8
Zm00001d027278_T030:8
Zm00001d027278_T005:8
Zm00001d027278_T034:8
Zm00001d027278_T036:8
Zm00001d027278_T073:8
Zm00001d027278_T116:8
Zm00001d027278_T072:8
Zm00001d027278_T049:8
Zm00001d027278_T122:5
Zm00001d027278_T096:8
Zm00001d027278_T055:8
Zm00001d027278_T039:7
Zm00001d027278_T009:8
Zm00001d027278_T101:7
Zm00001d027278_T064:8
Zm00001d027278_T068:8
Zm00001d027278_T054:8
Zm00001d027278_T035:8
Zm00001d027278_T089:8
Zm00001d027278_T091:8
Zm00001d027278_T099:7
Zm00001d027278_T023:8
Zm00001d027278_T086:8
Zm00001d027278_T095:7
Zm00001d027278_T037:7
Zm00001d027278_T069:8
Zm00001d027278_T103:8
Zm00001d027278_T060:8
Zm00001d027278_T098:8
Zm00001d027278_T081:7
Zm00001d027278_T094:8
Zm00001d027278_T040:8
Zm00001d027278_T007:8
Zm00001d027278_T087:7
Zm00001d027278_T027:8
Zm00001d027278_T074:8
Zm00001d027278_T047:8
Zm00001d027278_T112:8
Zm00001d027278_T022:7
Zm00001d027278_T109:7
Zm00001d027278_T045:8
Zm00001d027278_T105:8
Zm00001d027278_T051:8
Zm00001d027278_T008:8
Zm00001d027278_T001:8
Zm00001d027278_T080:8
Zm00001d027278_T070:8
Zm00001d027278_T043:8
Zm00001d027278_T042:8
Zm00001d027278_T062:7
Zm00001d027278_T108:8
Zm00001d027278_T065:7
Zm00001d027278_T053:8
Zm00001d027278_T038:7
Zm00001d027278_T002:7
Zm00001d027278_T117:8

					

			
		

General Information
CircRNA Name	Zm00001d027278_circ_g.1
ID in PlantcircBase	zma_circ_006337
Alias	zma_circ_0000281, ZmciR14
Organism	Zea mays
Position	chr1: 1522358-1524722 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ, CIRI2
Parent gene	Zm00001d027278
Parent gene annotation	transcription regulators
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d027278_T004:8 Zm00001d027278_T006:8 Zm00001d027278_T013:8 Zm00001d027278_T029:8 Zm00001d027278_T114:8 Zm00001d027278_T057:7 Zm00001d027278_T041:7 Zm00001d027278_T083:7 Zm00001d027278_T119:8 Zm00001d027278_T030:8 Zm00001d027278_T005:8 Zm00001d027278_T034:8 Zm00001d027278_T036:8 Zm00001d027278_T073:8 Zm00001d027278_T116:8 Zm00001d027278_T072:8 Zm00001d027278_T049:8 Zm00001d027278_T122:5 Zm00001d027278_T096:8 Zm00001d027278_T055:8 Zm00001d027278_T039:7 Zm00001d027278_T009:8 Zm00001d027278_T101:7 Zm00001d027278_T064:8 Zm00001d027278_T068:8 Zm00001d027278_T054:8 Zm00001d027278_T035:8 Zm00001d027278_T089:8 Zm00001d027278_T091:8 Zm00001d027278_T099:7 Zm00001d027278_T023:8 Zm00001d027278_T086:8 Zm00001d027278_T095:7 Zm00001d027278_T037:7 Zm00001d027278_T069:8 Zm00001d027278_T103:8 Zm00001d027278_T060:8 Zm00001d027278_T098:8 Zm00001d027278_T081:7 Zm00001d027278_T094:8 Zm00001d027278_T040:8 Zm00001d027278_T007:8 Zm00001d027278_T087:7 Zm00001d027278_T027:8 Zm00001d027278_T074:8 Zm00001d027278_T047:8 Zm00001d027278_T112:8 Zm00001d027278_T022:7 Zm00001d027278_T109:7 Zm00001d027278_T045:8 Zm00001d027278_T105:8 Zm00001d027278_T051:8 Zm00001d027278_T008:8 Zm00001d027278_T001:8 Zm00001d027278_T080:8 Zm00001d027278_T070:8 Zm00001d027278_T043:8 Zm00001d027278_T042:8 Zm00001d027278_T062:7 Zm00001d027278_T108:8 Zm00001d027278_T065:7 Zm00001d027278_T053:8 Zm00001d027278_T038:7 Zm00001d027278_T002:7 Zm00001d027278_T117:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATCTGTGATATAATATAACAATATTGATTGGTGATAGGTTTTGACTGCATTTGCAAATGCATT
CCACATGCTACAACCCTTGAGAGTTCCTGCCTGGAGaggttgcaacggagtttgcaatgtccct
tgtccaagcattgtttgctcatgatcctgttggcttcacagagtttcagaatgttcttgatgca
ctatcgaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGGTTGCAACGGAGTTTGCAATGTCCCTTGTCCAAGCATTGTTTGCTCATGATCCTGTTGGCTT
CACAGAGTTTCAGAATGTTCTTGATGCACTATCGAAGGTATGTATAATTCTGGACATGATCTTT
TATTTTCTTTTAATATTTATCCAAGGACCTGGTTCAACAGTAGGAAATGTTGGTTTGCAGCATA
CAAAGAGACCAGGTTCACCTGAATCGTTGCAACAATTGATTGAAATCGCAAGGAATAATGTGAG
CACCACTACTGGTTTTGTTGCTGTGAAGGATGAAAAGGTCAAACTGCCGAAGGATAAAAAGGTT
TATGATCTGATTTAAAAAATATAAGTTGCCTTCACATCTATGAATATTCTTTGATATCTCCTGT
CCTCAAAATGTCTGCACTGTTTATTCAATTGCATTTCTCTTGTAGGTTTTAGCTACCCGGGCAA
ACAAGGAGGAAAACACTGCTAATGAAATTACACTAGTTGATCCAAATCAGGTTTGGTTGACATG
CTGGAACTTATTCAGTTTTATGCATCATGAATCCTACAGATTTACAAGAACCTTTGTTTAATTT
ACATAAACCTATTCTCTTTATTTTTAGTTAGATGTTTTGGTTTTGGTTCTGTTTCTGTTTTCTT
TGATTCCATTTTTCAATTTGTTGGGTATGGGATCAGAATTCCTTAGTATAAATAAGCAACGATT
TTGTTTGTATCTTGGATGTTCCTTTTTCTACTCATAGAATTTCCTCTCATGATTGCGGTGATGT
GGTCACATATTAGCATGTTAGTTCAACTAGGAGATAGTTGTAGTCTTCCAATGGTGGTGTTACC
TGTATTTTGTTGCTGTTCTTGCTCAAGCCATTCTCACAACTATACCTTGAATCTATTTGCTGGA
CTGTTAATTTCCAATGGTGGTGTTACCTGTATTTTGTTGCTGTTCTTGCTCAAGCCATTCTCAC
AACTATACCTTGAATCTATTTGCTGGACTGTTAATTAATCTGTTAAATTGTTCGATGTACAGGT
GGCAGTCCTGTTTTCTGAATGGTGTCAGATGTGTAATCATGTAAGTGCTAGTGATGCGGCATAC
ACTCGTTTTGTCACACAGTTGCAGCAAGATGGTCTGCTGAAGGGGGATGATATCTCTGAACGCT
TCTTCCGTATTCTCACGGTGATGGATCTACCTTTGTACCAGGTTATGCAGTACACTTTGTCATA
CTCAGATACTTATTTTGAATCGTTCAGGAACTTGCTGTTACACACTCTCTAGTCTCCGAGCAGA
TCGTTGCTCCTGGTGGATCATCTCAGCAATCACCACAGCAACCTCACATTTCATATTTCTCCAT
TGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAGGTACCTAAAGGATTTTCTACATGTAGT
AAATGTAACTTTTGGACTGCAGTTTTTCAGTGTTGATGAGTTCATTATAGTCACGCATCATAAC
TGTTTAAAATTTAGTAAAATGTATTTTGGCTGTAAGTGTTGTTTTCATGAGAACCGGGGATCTT
TGGATATCTGAACTTCTGAAGTTATCAGAAAGTGATTAGTCATGTTGGATCAAACTGCAGATTT
TGATCCCTGCATTCTGTTGTGTTTAATTTTTATTCTATTTTTTTTTCTGCTATTGAGGTTTGTG
TTGTGCGGCATGATTGATGTATTATAGTGTCAAATCCGTTCTGTTCTATTTAGCTGCATTATCA
TGGTACTTGAGTAACATTTGAGCTATTAGTTGAGCTGGGTATCATTGGAGTCATATCTGGTAGG
GACCTTTATATTGCTTAATTATTAAGTTAATTTTTTCTCTAGAAGGGTAATTCCTTATTCTCCT
TGAGTTATTGGCAAATGGTATACCTGCTAAGATTGATAAAACTTATGTCAAGTATTATTAATTT
CTTGCTTGTTGTTTGTACTCAGTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCC
AAGGTTCGTTTTACAAATTGGTTATGGCTTTGGAACATATACATGTATTGATAGTTCATGAAAC
AAGTGTTTTCCAACTTGTCCTGTCCAGATCCTATCTGTTACAGTGAGGTCCATTCAGAAAGATG
CTGAGGAAAAGAAAGCTTCATTTAATCCTCGACCATACTTCCGATTGTTTATAAATTGGCTCTA
TGATCTTACTACTACCGATGGTCACCATGATAGTTCTAATTTTCAGGTACACATCGTTAGATAT
GTGTGGTTTAATACTTTTATTGTGACATCTGTGATATAATATAACAATATTGATTGGTGATAGG
TTTTGACTGCATTTGCAAATGCATTCCACATGCTACAACCCTTGAGAGTTCCTGCCTGGAG
						
					

			
		

Sequences
Splice junction sequence	CATCTGTGATATAATATAACAATATTGATTGGTGATAGGTTTTGACTGCATTTGCAAATGCATT CCACATGCTACAACCCTTGAGAGTTCCTGCCTGGAGaggttgcaacggagtttgcaatgtccct tgtccaagcattgtttgctcatgatcctgttggcttcacagagtttcagaatgttcttgatgca ctatcgaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGGTTGCAACGGAGTTTGCAATGTCCCTTGTCCAAGCATTGTTTGCTCATGATCCTGTTGGCTT CACAGAGTTTCAGAATGTTCTTGATGCACTATCGAAGGTATGTATAATTCTGGACATGATCTTT TATTTTCTTTTAATATTTATCCAAGGACCTGGTTCAACAGTAGGAAATGTTGGTTTGCAGCATA CAAAGAGACCAGGTTCACCTGAATCGTTGCAACAATTGATTGAAATCGCAAGGAATAATGTGAG CACCACTACTGGTTTTGTTGCTGTGAAGGATGAAAAGGTCAAACTGCCGAAGGATAAAAAGGTT TATGATCTGATTTAAAAAATATAAGTTGCCTTCACATCTATGAATATTCTTTGATATCTCCTGT CCTCAAAATGTCTGCACTGTTTATTCAATTGCATTTCTCTTGTAGGTTTTAGCTACCCGGGCAA ACAAGGAGGAAAACACTGCTAATGAAATTACACTAGTTGATCCAAATCAGGTTTGGTTGACATG CTGGAACTTATTCAGTTTTATGCATCATGAATCCTACAGATTTACAAGAACCTTTGTTTAATTT ACATAAACCTATTCTCTTTATTTTTAGTTAGATGTTTTGGTTTTGGTTCTGTTTCTGTTTTCTT TGATTCCATTTTTCAATTTGTTGGGTATGGGATCAGAATTCCTTAGTATAAATAAGCAACGATT TTGTTTGTATCTTGGATGTTCCTTTTTCTACTCATAGAATTTCCTCTCATGATTGCGGTGATGT GGTCACATATTAGCATGTTAGTTCAACTAGGAGATAGTTGTAGTCTTCCAATGGTGGTGTTACC TGTATTTTGTTGCTGTTCTTGCTCAAGCCATTCTCACAACTATACCTTGAATCTATTTGCTGGA CTGTTAATTTCCAATGGTGGTGTTACCTGTATTTTGTTGCTGTTCTTGCTCAAGCCATTCTCAC AACTATACCTTGAATCTATTTGCTGGACTGTTAATTAATCTGTTAAATTGTTCGATGTACAGGT GGCAGTCCTGTTTTCTGAATGGTGTCAGATGTGTAATCATGTAAGTGCTAGTGATGCGGCATAC ACTCGTTTTGTCACACAGTTGCAGCAAGATGGTCTGCTGAAGGGGGATGATATCTCTGAACGCT TCTTCCGTATTCTCACGGTGATGGATCTACCTTTGTACCAGGTTATGCAGTACACTTTGTCATA CTCAGATACTTATTTTGAATCGTTCAGGAACTTGCTGTTACACACTCTCTAGTCTCCGAGCAGA TCGTTGCTCCTGGTGGATCATCTCAGCAATCACCACAGCAACCTCACATTTCATATTTCTCCAT TGATTCATATGCAAAGCTTGTGGTTATGGTTCTCAAGGTACCTAAAGGATTTTCTACATGTAGT AAATGTAACTTTTGGACTGCAGTTTTTCAGTGTTGATGAGTTCATTATAGTCACGCATCATAAC TGTTTAAAATTTAGTAAAATGTATTTTGGCTGTAAGTGTTGTTTTCATGAGAACCGGGGATCTT TGGATATCTGAACTTCTGAAGTTATCAGAAAGTGATTAGTCATGTTGGATCAAACTGCAGATTT TGATCCCTGCATTCTGTTGTGTTTAATTTTTATTCTATTTTTTTTTCTGCTATTGAGGTTTGTG TTGTGCGGCATGATTGATGTATTATAGTGTCAAATCCGTTCTGTTCTATTTAGCTGCATTATCA TGGTACTTGAGTAACATTTGAGCTATTAGTTGAGCTGGGTATCATTGGAGTCATATCTGGTAGG GACCTTTATATTGCTTAATTATTAAGTTAATTTTTTCTCTAGAAGGGTAATTCCTTATTCTCCT TGAGTTATTGGCAAATGGTATACCTGCTAAGATTGATAAAACTTATGTCAAGTATTATTAATTT CTTGCTTGTTGTTTGTACTCAGTACTCAGTGGAGATAACACCAAATAAAGCCAGTATACTTTCC AAGGTTCGTTTTACAAATTGGTTATGGCTTTGGAACATATACATGTATTGATAGTTCATGAAAC AAGTGTTTTCCAACTTGTCCTGTCCAGATCCTATCTGTTACAGTGAGGTCCATTCAGAAAGATG CTGAGGAAAAGAAAGCTTCATTTAATCCTCGACCATACTTCCGATTGTTTATAAATTGGCTCTA TGATCTTACTACTACCGATGGTCACCATGATAGTTCTAATTTTCAGGTACACATCGTTAGATAT GTGTGGTTTAATACTTTTATTGTGACATCTGTGATATAATATAACAATATTGATTGGTGATAGG TTTTGACTGCATTTGCAAATGCATTCCACATGCTACAACCCTTGAGAGTTCCTGCCTGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.054492777

Conservation Information
Conserved circRNAs	NA
PMCS	0.054492777

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1523728-1522406(+)
1522398-1524578(-)
1522409-1524571(-)
						
						Potential amino acid sequence
						
							MVLKYSVEITPNKASILSKILSVTVRSIQKDAEEKKASFNPRPYFRLFINWLYDLTTTDGHHDS
SNFQVLTAFANAFHMLQPLRVPAWRGCNGVCNVPCPSIVCS*(+)
MLGQGTLQTPLQPLQAGTLKGCSMWNAFANAVKT*(-)
MSKQCLDKGHCKLRCNLSRQELSRVVACGMHLQMQSKPEN*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	Y
Potential coding position	1523728-1522406(+) 1522398-1524578(-) 1522409-1524571(-)
Potential amino acid sequence	MVLKYSVEITPNKASILSKILSVTVRSIQKDAEEKKASFNPRPYFRLFINWLYDLTTTDGHHDS SNFQVLTAFANAFHMLQPLRVPAWRGCNGVCNVPCPSIVCS(+) MLGQGTLQTPLQPLQAGTLKGCSMWNAFANAVKT(-) MSKQCLDKGHCKLRCNLSRQELSRVVACGMHLQMQSKPEN*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Ma et al., 2021b;Zhang et al., 2019

circRNA

Detail information of Zm00001d027278_circ_g.1

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