Detail information of BGIOSGA033768_circ_g.7


General Information
CircRNA Name BGIOSGA033768_circ_g.7
ID in PlantcircBase osi_circ_009135
Alias Chr11:24123369_24124649(MH63RS2), Chr11:24137037_24138317(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 18272473-18273753  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA033768
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033768_circ_g.8
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA033768-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGACAAGGTATCCTCTACTTGGATCATAGAGCTCACTCAAAGGCATAAAAGATGTGAAACCCC
AATCACTCTCACGTGCATTAAATTGATGCTGAGTATccttaaccatggtatctctcatataatc
gtactcaaaacgcttcagttgaagttgcaaaactggggggaaatcaaggaacagaacacccttt
ttcgcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAACCATGGTATCTCTCATATAATCGTACTCAAAACGCTTCAGTTGAAGTTGCAAAACTGG
GGGGAAATCAAGGAACAGAACACCCTTTTTCGCATCCTGAGACAATATCAAAAAAACATAGTCA
AGAATTGGCACCAAAACCAATAAAAATGGGCTTCATTTATAAAATATAGATGGAGCAAGCTGTT
ATAGTATATGGGATGCAGATTCCCTTTATCTTCATAGATACATAAAAGTCCACAAGTTCTATCA
AACCTTTATGAAACAACCAACTCTAGCTTCAGTTTCAAAGCTTAAAGTGAGAACTGAGAAGAAC
ATGTGGGTACCTGTAAACCATGATTCTCTGCATGATACTTATTATCACCTTCGAGGCGCTCAAC
TTCAACATATTTATCAAACGATGCATACACATCACGACAACCTTTAACATCAAGTTGAAGGTCT
GCATGGCCATAATACAGCATTAACTTGACAATAAATAATGAAACACATCTAATGTGAACCCATA
ATCTGGTACCAGGACAAAACCTACCATAAAAGGACTCCTTCCTGTTGGATTTATAGTCAACATT
TATACACTCTATATAATTGATGTGGTGACCTTCGAATAACTTTTCAATCGTTCCCTCTACGACA
GTTCTCTAGGAAGAAAGCAAAGTTAATAGCAGCCAACATGCAGCATATATACAGCTCTATACCA
GATTTGTCACCTTCATCTTATCTTCAAGTTTCTCACAGAGAACTCTGTTGAGCTCTTGTACATC
ATGTTGCATGAAGGAATCATATGTGTCCCATCCAAAAGATTTGGTCAGCTCTTTGGTGGCTACA
CTATTGTCACTATACTGGAGCTTGTAGAAAAGGCTCTGCAATGCCAACGGAATACTCCCAGATG
GCATATCATTTTCGGTGGTTGGCATATGATACACAGCCTGGGTAAAATAATGAAGTTAGTCAAT
TAGTTCTGGAAACAATAGTCTAGAATGCTCTGAATTATGATGCATGATCTCACACCTTCCTGAA
GTATGGTATATGGTATAGTGTCTGTAGTAGAGAGTTCATGTAACAGGTAGCTCCTTGGTTCTTC
AGGCCAACGTAACCTGTTTCTTTTTTTGAATCATATGTCCAATAATCAACCATTTTGCGGACAG
CAACCTCAGCCTCCACAACAACAGTATCATCGACAAGGTATCCTCTACTTGGATCATAGAGCTC
ACTCAAAGGCATAAAAGATGTGAAACCCCAATCACTCTCACGTGCATTAAATTGATGCTGAGTA
T
Conservation Information
Conserved circRNAs osa_circ_011496 csi_circ_001097
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021