Detail information of Os08g0365900_circ_g.4


General Information
CircRNA Name Os08g0365900_circ_g.4
ID in PlantcircBase osa_circ_036851
Alias Os08circ07720
Organism Oryza sativa
Position chr8: 16954684-16957412  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os08g0365900
Parent gene annotation Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p domain conta
ining protein. (Os08t0365900-01);Similar to NOL1/NOP2/sun family
protein. (Os08t0365900-02)
Parent gene strand -
Alternative splicing Os08g0365900_circ_g.1 Os08g0365900_circ_g.2 Os08g0365900_circ_g.3 Os08g0365900_circ_g.5
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0365900-02:3
Os08t0365900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCACCATCCTCAGCAGGTTGTTCAATAGCAACCGACACTGCAACTTTGTCACCCTTTTCAAC
ATGTGAGCTGCAAGCTAAAACTCCTGGGATGTACACcaaggacacgagcagccacaacacttgg
aagattctgaagaaatatctccccttcgagcacatctagacgacataaagaaacaaaatttagg
atcatgca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 349
Transcript exons: 16954684-16954746,16956949-16957086,16957265-16957412
CAAGGACACGAGCAGCCACAACACTTGGAAGATTCTGAAGAAATATCTCCCCTTCGAGCACATC
ATTGAAAGATGGGAGCTTGTACACCCTCTCAGTCATCTCCACTGCAACTCCATGAGGAACACGA
AATATTCCGGACCTTGACATTGCAGTGATCCCTTGACCAATGTACAAACCCTTTCTTTCTTCAT
GATGTGCATCTGACTGCAATCCCTGTAAAACAGTTCCTCGTGTTATACCAACGGTCCAACCACC
ATCCTCAGCAGGTTGTTCAATAGCAACCGACACTGCAACTTTGTCACCCTTTTCAACATGTGAG
CTGCAAGCTAAAACTCCTGGGATGTACAC

Genomic sequence CAAGGACACGAGCAGCCACAACACTTGGAAGATTCTGAAGAAATATCTCCCCTTCGAGCACATC
TAGACGACATAAAGAAACAAAATTTAGGATCATGCATTTGAAGATCAGTCAATACTAAATAAAT
AAAATGCAAATATGAAATGAAAAATGTAAGTATTCATAGAGGCATTAACAAGGGTATTCAGTTA
AGAAATTCGAATCAAAGAAGAGGTCAACCGATCAACCTTCAAAAGTAGGGATGCCCATCAACAA
CCCTATACCATTTGGCTCTATGCAGAGATCGCAATATTTTTACCATGCATCAAACCAAGAATAT
GCAAAGCCCAAACTCTAATATGAGGATTTGCGTGGTCATGTGATCAGTAGGCCACAATAGTAGG
CATAATCTACAATCAGAAGTGAAATGAAAATTAAATGAGCTTAGCCGAAGCCAAAGCCTAGGCT
CTCAGGCTTTGTTGAACCGAGCTTGAATAGATCGCCAACCTGGCTGTGCGCACAATTTTTTTGT
ATTTGATAAACTAGTAGATCAAGTATAAATTAGTATGCATACACAGCAGCTTAGCATCACATAT
TTCTCTTAGTCCTCGTCCTGTTGCCAATGTGATTAACAATAAATTTATTGTCTTTATCAAGAGA
TTGTTCTTGAAACATATGCTATACTGTTCACGAGCTTACACAAGCCAAGCTCAAGCCTGACCAA
GTTTCCTCCGAATCCGAACCAAGATCAAGCCTGCAGTCAGAACTCACTGACAGTCCTAATAACA
ATTAAGCTCAGATGTTTTTTTTCATGCATACAAACTCTGTCAGTGTTACCGTGACTCAGGCTCA
AGAGTCGGAATCCGACTCAGACTCGATAGTTGGAGTCCGACTCAGACTCGTGTGTCCGACTTGG
CAAACTCTAGAAAATAGGATTCGGAGACTGGTCTAATATATATAAGTTCTAATAAAAAATATTA
TATAAAATAAGATACCTACACATAAGATAGTTAGTTAGACACAATACTAGTGCTCAGAAGATCC
CATTTATATGAAACAAGGAAGTCAAAAGTGCATGCTGCATTTTGCCATCTCTCGTGTGAGGCAA
AAGCCTGCAAAACTGCAAAAAGGACATTCTCTCTCCTCTCTCCCTCACCTGCTCTCTCTCTCCC
ACATGCTTTATCCCTACACACTACAGGACTGCTGCTAGAGCTTTATTACTTCACCTTGCAGCAC
AGCAGCAGCGATTGCAACTCTCCTTTTGGACTTGGACTCGCGCTAGCAGTGTCCGATGCGCGTC
GTCCCGCGTCTGATACACATCGACACGGGGATGCGTGTCGACGCGGCAAATTTTTCTTAGACAC
GGGAGTCCCGGTAACACTAGGGGAGAGAGGAGAGATAATGTTCCTTTTTGCAGTTTTACAGGCT
TTTGCCTCACGAGAGATGGCAGGATGCTGTTCTCAGAGAGCATGCACTTTTGACTTCCTTGTTT
CATATAAATGGCATCTTCTGTGCAGTAGTATTGTGTCTAACCAACTATTTTATGTGTTGGTATC
TTATTTTATATAATATTTTTTATTAGAACTTCTATATATTAGACGAGTCACCGAATCTTATTTT
CTAGAGCTCGCCAAGTCGTACACCCGAGTCCAAGTCCCAGTAACACTGCTCTCCCCCCACCTGC
TCTCTCTCCCCCCACATGCTTTATCCCTACGGAGTAGAGTAGTACTACTCCACACTACAAGACT
GCTGCTAGAGCTTTATTTCTTCACCCTGCAGGCTGCAGCACAGCAGTAGCGATTGCAACTCTCC
TTTTGGACTTGGACTCGCGCTAGCAGTGTCCGATGCATGTCATCCTGCGTCGACATAGAGATGT
GTGTCGACGCGGCAAAACTTTTTTGGACACGCGGGTCCCGGTAACACTGAACTCTGTATCTTCA
AGAAATAGTCTAATTCAAATGACAAGATAAAGGAATTACTTTGTTCGTGAACTAATTCATATCC
TTCATTGTTTGGTTCGTGGTGGCTGTCAAACCCATGCATGACTACTTATAATGAATGCTCCTTC
TAAAGAAGTCAGCTATGAATGTGATCGCCAAACTGGAGATCTCACATCTTTCAAAGTTAGTTGC
ATGAATTGGCACACAACATACTATATGGGGGAAAATAATTCACCTATCAAATTGCCAGTTCTAT
CCTTATATTAAAAGAATGAAATACAATAGTGTATTTGTACCCGTGTTACATACAAATAGCCAAG
AAATGCAGCAAAGAAGTAAATGTACCATTGAAAGATGGGAGCTTGTACACCCTCTCAGTCATCT
CCACTGCAACTCCATGAGGAACACGAAATATTCCGGACCTTGACATTGCAGTGATCCCTTGACC
AATGTACAAACCCTTTCTTTCTTCATGATGTGCATCTGCAAAGAATTGAATTTCATAGCGTTAT
GTGTATGACTTTTAGCTGGGGAAAACAACCTCACACTTAAAACTGTAACAGTGACTAACATACA
TGAAGTACAGAAAAAAAAAAAGAGTATTTGCAGTTTATCAATAAGCTATCAAAAAGGATTTAAA
TTTTTCAGTTGAAAAGCTTGCCTGACTGCAATCCCTGTAAAACAGTTCCTCGTGTTATACCAAC
GGTCCAACCACCATCCTCAGCAGGTTGTTCAATAGCAACCGACACTGCAACTTTGTCACCCTTT
TCAACATGTGAGCTGCAAGCTAAAACTCCTGGGATGTACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.102793209
Functional Information
Coding potential Y
Potential coding position 16957406-16957027(+)
16957035-16957374(-)
16956953-16957374(-)
Potential amino acid sequence MYTKDTSSHNTWKILKKYLPFEHIIERWELVHPLSHLHCNSMRNTKYSGP*(+)
MSRSGIFRVPHGVAVEMTERVYKLPSFNDVLEGEIFLQNLPSVVAARVLGVHPRSFSLQLTC*(
-)
MMCSKGRYFFRIFQVLWLLVSLVYIPGVLACSSHVEKGDKVAVSVAIEQPAEDGGWTVGITRGT
VLQGLQSDAHHEERKGLYIGQGITAMSRSGIFRVPHGVAVEMTERVYKLPSFNDVLEGEIFLQN
LPSVVAARVLGVHPRSFSLQLTC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015