Detail information of EPlOSAG00000007512_circ_ig.4


General Information
CircRNA Name EPlOSAG00000007512_circ_ig.4
ID in PlantcircBase osa_circ_023868
Alias Os_ciR4405
Organism Oryza sativa
Position chr4: 21439565-21440010  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000007512_circ_ig.3
Support reads 5
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGTGATCATACCGCTATCCTCCGGGGTTGTGTGCAGACTATGCTGCAGTAACCACCAAGCTC
AGATTCAATCATATCATCCAAAATAAACTGTGGCACtgtcaagacgaacttgatatccgaccaa
agaatccttagatccaggagaagattcacacctctcactagacactctttcagccactgaaatg
gcctacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGTCAAGACGAACTTGATATCCGACCAAAGAATCCTTAGATCCAGGAGAAGATTCACACCTCTC
ACTAGACACTCTTTCAGCCACTGAAATGGCCTACAAGTGAGTAGCTATACCACGTTATATTCAA
CAATCTAGATCTGTTTAGTATAAGCTGCGTGATCATCATATAAAAAGGATATCTAGCATACCAG
ATGATCTCACAGTAACAACACTAAGATATTGTACTTTATGATGAATTTATTATCCCAGAAGTGA
TTTCATGAATATGACATGCAATTTTTATATTGCCTGCAATGTATTGCTAATATGCTGCACCGGA
AAGATAAAGAAAAGATCAAGGTCTGCACTGTGATCATACCGCTATCCTCCGGGGTTGTGTGCAG
ACTATGCTGCAGTAACCACCAAGCTCAGATTCAATCATATCATCCAAAATAAACTGTGGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.1678554
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015