Detail information of Os04g0572600_circ_g.1


General Information
CircRNA Name Os04g0572600_circ_g.1
ID in PlantcircBase osa_circ_024958
Alias Os04circ11744
Organism Oryza sativa
Position chr4: 28844126-28845838  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os04g0572600
Parent gene annotation Similar to DNA-directed RNA polymerase. (Os04t0572600-01)
Parent gene strand +
Alternative splicing Os04g0572600_circ_g.2
Support reads 3/1
Tissues leaf/shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0572600-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGTTGTCACAGAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGG
TATGACAAGATTGGTGTGGGAATAAGAGAAATCAAGgatttttggaatttaagaatgttaaggt
gcaatgtcaagaggataatgaacttgttctgaaagtcggtatgtctgagcattgcaagagtggg
aagttctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 911
Transcript exons: 28844126-28844352,28844488-28844661,28844756-28844893,28
845361-28845620,28845727-28845838
GATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGATAATGAACTTGTTCTGAAAGT
CGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCTACCCTACAAAATGCTTGCATCCCA
ATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCAGAGAGAGTATATGATAATTTCTGCTCAT
ATGGCATAGACTCAGCATGGAAATTCTTTGTCGAATCTTTAAGATCCACAACAGATGCTATTGG
AAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGCCTATCTGTGAGTGGGCAGTTC
CATGGGCTAAGCAGTCAAGGTTTAAAGCAGCAAAGGACTTGGTTATCAATCTCCTCTCCATTTT
CTGAAGCATGCTTTTCTAGGCCTGCACACAGTTTTATAAATGCTGCAAAGCGAGATTCAGTGGA
CAATCTTTCTGGTACTCTAGATGCAATTGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGT
CCTTTCAAGATTCTATATTCTGGGAAGTCACATGAGACAAAACAAAATGAGCACATATATGACT
TTCTACATAACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGAC
TGAAAAAACTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGT
GCCATATCTTTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATTGACA
TGCGCACTTCCTTGCAAAACATGCTTCGGGAGTACACATTAAATGAAGTTGTCACAGAACAAGA
TAAATCATGCTTAATGGAGGCCTTGAAATTTCATCCCAGAGGGTATGACAAGATTGGTGTGGGA
ATAAGAGAAATCAAG

Genomic sequence GATTTTTGGAATTTAAGAATGTTAAGGTGCAATGTCAAGAGGATAATGAACTTGTTCTGAAAGT
CGGTATGTCTGAGCATTGCAAGAGTGGGAAGTTCTGGGCTACCCTACAAAATGCTTGCATCCCA
ATAATGGAGTTGATTGATTGGGAGCGGAGCCGACCAGAGAGAGTATATGATAATTTCTGCTCAT
ATGGCATAGACTCAGCATGGAAATTCTTTGTCGAAGTATGATACTTGCTACCCTTCATTCTGGC
TTCACTGTTTCATTCATTCCTGTGTAAAATGGTTTCAAAGTTTAATTGTTTGTGATAAATTTCT
CCTGTAGGTTTATAACATTTTCATTTTCACTTGCTTTTTCAGTCTTTAAGATCCACAACAGATG
CTATTGGAAGGAATATCCATCGACAGCACTTACTGGTTGTGGCAGACTGCCTATCTGTGAGTGG
GCAGTTCCATGGGCTAAGCAGTCAAGGTTTAAAGCAGCAAAGGACTTGGTTATCAATCTCCTCT
CCATTTTCTGAAGCATGCTTTTCTGTGAGAAATCTTAGCTTTCTTACTGATTATTAACTATGAG
ATTTCCCTTTTGAAATGTTCTGAACATCTTCTGATTTTATGGCTTTTCCTGCAGAGGCCTGCAC
ACAGTTTTATAAATGCTGCAAAGCGAGATTCAGTGGACAATCTTTCTGGTACTCTAGATGCAAT
TGCCTGGGGCAAAGAACCTTGTGCAGGGTCGTCAGGTCCTTTCAAGATTCTATATTCTGGGAAG
GTGTGTATTGTAACTTCCCTGCTGAATCAAGCACTACTCTTTTAGAGTAACTTTAACGTGCTCC
CAAAATGAAAAGAAAATTGAGATCTTGATCAATCACCCCCTATGAATACTCACGATGCATTATA
CATGCACAATTTAACTCTTTGGATAGCATAAAGGTACAATACTAAATTTCTTTCCTAATGCTTT
GCCTACGAGCCTCTAATGGGCTGCAAGCTAGAGAAATTTGCATTGAGTAAGTATTCACTGAAAT
AATTTGTTTTCTGGTTCTGAATAATTGATATAAAATGAAGTGAAGATCTTATATTATCTCTATG
ATGTTCATATTATTTATGCTGAGCTGTTGATTGATGATATTCCGTTACATTAATTTTGTACAGA
AATTGAATCGCAGTGCCTGCTTCTGTGATAGATGGATGTTCAGATATTTCAAATTGGCTGCTAA
CATTTATTCTTTTTTGCAGTCACATGAGACAAAACAAAATGAGCACATATATGACTTTCTACAT
AACCCTGAAGTTCAGGCTCTTGAAAAGAATGTAATGGATACCTACAGAAAAAGGACTGAAAAAA
CTTCCAAGCGGAGATCAGCACTCAATTCTGAAGGCAATGCTACCATCAATGGTGGTGCCATATC
TTTTAATCAGAAGTTTCTTAATGCTAAAGTTGGTATATGGGAGAACATCATTGACATGCGCACT
TCCTTGCAAAACATGCTTCGGGAGTATGTTATACCACTATCCATGGAATCGTGACTGATAGTTA
TTTTCTTTTTTAAAAAAAAAGCTTTATAATCCTTGGTATTGATGTCATCTTCTACTTTCATGAA
GGTACACATTAAATGAAGTTGTCACAGAACAAGATAAATCATGCTTAATGGAGGCCTTGAAATT
TCATCCCAGAGGGTATGACAAGATTGGTGTGGGAATAAGAGAAATCAAG
Conservation Information
Conserved circRNAs osi_circ_014689
PMCS 0.134820121
Functional Information
Coding potential Y
Potential coding position 28844195-28844182(+)
28844207-28845792(-)
Potential amino acid sequence MSEHCKSGKFWATLQNACIPIMELIDWERSRPERVYDNFCSYGIDSAWKFFVESLRSTTDAIGR
NIHRQHLLVVADCLSVSGQFHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDN
LSGTLDAIAWGKEPCAGSSGPFKILYSGKSHETKQNEHIYDFLHNPEVQALEKNVMDTYRKRTE
KTSKRRSALNSEGNATINGGAISFNQKFLNAKVGIWENIIDMRTSLQNMLREYTLNEVVTEQDK
SCLMEALKFHPRGYDKIGVGIREIKDFWNLRMLRCNVKRIMNLF*(+)
MLRHTDFQNKFIILLTLHLNILKFQKSLISLIPTPILSYPLG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017