Plant Circular RNA Database

Detail information of Os12g0429200_circ_g.27

			
						 General Information
					
						CircRNA Name
						Os12g0429200_circ_g.27
					
						ID in PlantcircBase
						osa_circ_011364
					
						Alias
						Os_ciR1554
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 13778928-13781283  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						circRNA_finder, find_circ
					
						Parent gene
						
							Os12g0429200						
					
						Parent gene annotation
						
							Similar to Relative to SR12 protein (Fragment). (Os12t0429200-01
)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0429200_circ_g.2 Os12g0429200_circ_g.3 Os12g0429200_circ_g.4 Os12g0429200_circ_g.5 Os12g0429200_circ_g.6 Os12g0429200_circ_g.7 Os12g0429200_circ_g.8 Os12g0429200_circ_g.9 Os12g0429200_circ_g.10 Os12g0429200_circ_g.11 Os12g0429200_circ_g.12 Os12g0429200_circ_g.13 Os12g0429200_circ_g.14 Os12g0429200_circ_g.15 Os12g0429200_circ_g.16 Os12g0429200_circ_g.17 Os12g0429200_circ_g.18 Os12g0429200_circ_g.19 Os12g0429200_circ_g.20 Os12g0429200_circ_g.21 Os12g0429200_circ_g.22 Os12g0429200_circ_g.23 Os12g0429200_circ_g.24 Os12g0429200_circ_g.25 Os12g0429200_circ_g.26 Os12g0429200_circ_g.28 Os12g0429200_circ_g.29 Os12g0429200_circ_g.30 						
					
						Support reads
						12/2
					
						Tissues
						root/seed
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0429200-01:7

General Information
CircRNA Name	Os12g0429200_circ_g.27
ID in PlantcircBase	osa_circ_011364
Alias	Os_ciR1554
Organism	Oryza sativa
Position	chr12: 13778928-13781283 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ei-circRNA
Identification method	circRNA_finder, find_circ
Parent gene	Os12g0429200
Parent gene annotation	Similar to Relative to SR12 protein (Fragment). (Os12t0429200-01 )
Parent gene strand	-
Alternative splicing	Os12g0429200_circ_g.2 Os12g0429200_circ_g.3 Os12g0429200_circ_g.4 Os12g0429200_circ_g.5 Os12g0429200_circ_g.6 Os12g0429200_circ_g.7 Os12g0429200_circ_g.8 Os12g0429200_circ_g.9 Os12g0429200_circ_g.10 Os12g0429200_circ_g.11 Os12g0429200_circ_g.12 Os12g0429200_circ_g.13 Os12g0429200_circ_g.14 Os12g0429200_circ_g.15 Os12g0429200_circ_g.16 Os12g0429200_circ_g.17 Os12g0429200_circ_g.18 Os12g0429200_circ_g.19 Os12g0429200_circ_g.20 Os12g0429200_circ_g.21 Os12g0429200_circ_g.22 Os12g0429200_circ_g.23 Os12g0429200_circ_g.24 Os12g0429200_circ_g.25 Os12g0429200_circ_g.26 Os12g0429200_circ_g.28 Os12g0429200_circ_g.29 Os12g0429200_circ_g.30
Support reads	12/2
Tissues	root/seed
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0429200-01:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAAAGACATAGGTCTCAATTACATCTGCGCCACCCTCCTTGCACTTTGCAATTAAACTAGGCC
ACATCTGACATAATTTGTATATCAATTAAAAGAATCcatccatcccaatcttcagtccatattg
ttggtttattgtaagaatttggcttgaaaccatcgcaataaaatgcattgcatgtatcgatctg
ccaaaaag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CATCCATCCCAATCTTCAGTCCATATTGTTGGTTTATTGTAAGAATTTGGCTTGAAACCATCGC
AATAAAATGCATTGCATGTATCGATCTGCCAAAAAGGATGAATTAGCTACTGACCTACTTCATG
CAATTACCAAAACAATATAATATTAACAAGAATCAAAAGATTATGAGGTCACCTACAATTTCTT
CTGGAGCATCAGTCTGCCTGCACATCACCCAAGGAATGCCAGTGTCAAGCCCAATTGCCATCTG
AGCGGCCCATTGCATATATCTCTTCCCTGCTTGGCCATAATTTCCTTGAATATTCCCATACTCG
TTTTCAATCTGTCAAACATTCCCCACAGAAATGCCAGACAAAAAGACAAGTCATGTGGACATGT
GCCCATTTTCATTTCAACTTTTGGACATATATGGTATTACTAACAAAATGCATAAAAGATTATC
AGCAGTCATATAAGCATGGCAAATATATACTGTATCCTTCGGTTTTGGATGTGCAAGTCAGAAA
AGTAACATATGAAACTCAAAAAGAAAAAATAAAGAAAAGAAGTGCATATGGTATTGTGGTCCTG
TTATTGACCAATTTGGTCATGATAACACATCTACACTGGATGCTAATTCCAGTTTTCTTGTATC
AACTTGTCTAAAACCAATATTGAGATTTCAAAAGACTACATTGTTTCCATTACCAATAAATACA
ATTTACTGCACCAATATTAGTGATCACGAGTACTGCTGTCAGTTTGCCATCTGTATTCCAAACA
AAATAATATTGATGACAGATCTTCAAGGATTTGTATCACCTAGATTTAGCTATGCAATATAGTG
CATATTCTTGTTGAAAAGTCAAGAGTAACGAAGTTTTTTGTTTCCTTGGAAAAATGTTCAACTG
ACTGGAGAAATAGCATCAGAGAATAGTATAAAGACCTGTTGTAATATAATGGGACCACCTTGCC
AAGAATAAAGTTTCTCCTCTTTCATTAAAGTGACAATTTTTGTCACGAAAGTCTGCATTTCAGC
CTGTAAACATTTAGAAAAATTAGTTGTTACAATGGTGTTTGCGCATGCCCCTTGAAAAAACATT
TTGTAATTCTGCATTCTTTCCTGTCAGACTTTGGTGTTCAAATTTGAAGAGTTTGAATAATATA
AATTATCAGATGAAAGTAATATGATCTATAGAAGGACATGTGTTTACCTTGAATGGTTCATTGT
CAGTTCGGAATTCTATGCCAGGGATGTCACGTAACCAAACTGGGAAACCACTGTAGAAATGGAT
GAAGAAACAAAGGTAAGTAAAAGAGAGAAAAATTATGTAGCGTTTCTCAATAGGAGAATTATAA
CCAGATAGAACTGTGTAAAGTTTAAAATTATAGAGGAAATACAATGAATAAACATCAAAGTTAA
TTGAAAGAAGAAAAACACATGTCTAGATTAATATACGAACAGCCTAGAGTACATAATGGGAGAA
ATATATGGCTCTCTAAGTGTTTAGACTAGCTTCATTCATGAGAACAACTGTGATACTGACTTTT
TTATGCTGATCGATATGAGAATAAATTAATGAGTAAATTATTCATAGAAAATCCTAGAATAGCC
TCCTTAGCTTGAGTGGCATTATACTACAGGCACAAATGGTTAAAACAGAAAATGGCCAACTAAA
TTAAGCATGGCATCCCCTCTCAAAAGTTTTTTTTTTTAAAAAAAAAAAAAGGAACAACATTATC
ATAGGGAATACTAAATGTAGTTAGACCCACAAAATGAAGGTTCCAGTCAATGCCCAACCATTAC
TAATTAAAGTAAGCAGTAGCTATGGTGAAGATATGCTCAAGCTAAAAAGGTGATATTGTAATAT
TTTTACACTGTTCCTTTTTAGTTAATGCAGTGTGTATGTGCACAAGCTAAAAAGGATTGCAAAC
ATGTAACAAGCAATCTTTTTCGTCTGACACAATTCAATACTCTAATAGGTACAACTGATATGAA
GTAAATGCTAAGATATAAACAGACCCGAAATTCCATTCTGCACAAGCATATGGGCCGATACGAA
GAAAAAGAAATAGACCTTCGGCAGCAACCAGCTTCGCAAATTTCACAAGATCAATCTTCGCAAA
TTTCACAAGATCAAATCTTTCTTCAAAGTAATACTGGGCAAAATGCATGGAACAAACATAAATT
AACACTTAAGTACCAGAACCAATAGAAATGAATATTTGAGCAACTATATTACCTGACCTTTGGC
TGGCTCATGGCCATTCCAAAAGACATAGGTCTCAATTACATCTGCGCCACCCTCCTTGCACTTT
GCAATTAAACTAGGCCACATCTGACATAATTTGTATATCAATTAAAAGAATC
						
					

			
		

Sequences
Splice junction sequence	CAAAAGACATAGGTCTCAATTACATCTGCGCCACCCTCCTTGCACTTTGCAATTAAACTAGGCC ACATCTGACATAATTTGTATATCAATTAAAAGAATCcatccatcccaatcttcagtccatattg ttggtttattgtaagaatttggcttgaaaccatcgcaataaaatgcattgcatgtatcgatctg ccaaaaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CATCCATCCCAATCTTCAGTCCATATTGTTGGTTTATTGTAAGAATTTGGCTTGAAACCATCGC AATAAAATGCATTGCATGTATCGATCTGCCAAAAAGGATGAATTAGCTACTGACCTACTTCATG CAATTACCAAAACAATATAATATTAACAAGAATCAAAAGATTATGAGGTCACCTACAATTTCTT CTGGAGCATCAGTCTGCCTGCACATCACCCAAGGAATGCCAGTGTCAAGCCCAATTGCCATCTG AGCGGCCCATTGCATATATCTCTTCCCTGCTTGGCCATAATTTCCTTGAATATTCCCATACTCG TTTTCAATCTGTCAAACATTCCCCACAGAAATGCCAGACAAAAAGACAAGTCATGTGGACATGT GCCCATTTTCATTTCAACTTTTGGACATATATGGTATTACTAACAAAATGCATAAAAGATTATC AGCAGTCATATAAGCATGGCAAATATATACTGTATCCTTCGGTTTTGGATGTGCAAGTCAGAAA AGTAACATATGAAACTCAAAAAGAAAAAATAAAGAAAAGAAGTGCATATGGTATTGTGGTCCTG TTATTGACCAATTTGGTCATGATAACACATCTACACTGGATGCTAATTCCAGTTTTCTTGTATC AACTTGTCTAAAACCAATATTGAGATTTCAAAAGACTACATTGTTTCCATTACCAATAAATACA ATTTACTGCACCAATATTAGTGATCACGAGTACTGCTGTCAGTTTGCCATCTGTATTCCAAACA AAATAATATTGATGACAGATCTTCAAGGATTTGTATCACCTAGATTTAGCTATGCAATATAGTG CATATTCTTGTTGAAAAGTCAAGAGTAACGAAGTTTTTTGTTTCCTTGGAAAAATGTTCAACTG ACTGGAGAAATAGCATCAGAGAATAGTATAAAGACCTGTTGTAATATAATGGGACCACCTTGCC AAGAATAAAGTTTCTCCTCTTTCATTAAAGTGACAATTTTTGTCACGAAAGTCTGCATTTCAGC CTGTAAACATTTAGAAAAATTAGTTGTTACAATGGTGTTTGCGCATGCCCCTTGAAAAAACATT TTGTAATTCTGCATTCTTTCCTGTCAGACTTTGGTGTTCAAATTTGAAGAGTTTGAATAATATA AATTATCAGATGAAAGTAATATGATCTATAGAAGGACATGTGTTTACCTTGAATGGTTCATTGT CAGTTCGGAATTCTATGCCAGGGATGTCACGTAACCAAACTGGGAAACCACTGTAGAAATGGAT GAAGAAACAAAGGTAAGTAAAAGAGAGAAAAATTATGTAGCGTTTCTCAATAGGAGAATTATAA CCAGATAGAACTGTGTAAAGTTTAAAATTATAGAGGAAATACAATGAATAAACATCAAAGTTAA TTGAAAGAAGAAAAACACATGTCTAGATTAATATACGAACAGCCTAGAGTACATAATGGGAGAA ATATATGGCTCTCTAAGTGTTTAGACTAGCTTCATTCATGAGAACAACTGTGATACTGACTTTT TTATGCTGATCGATATGAGAATAAATTAATGAGTAAATTATTCATAGAAAATCCTAGAATAGCC TCCTTAGCTTGAGTGGCATTATACTACAGGCACAAATGGTTAAAACAGAAAATGGCCAACTAAA TTAAGCATGGCATCCCCTCTCAAAAGTTTTTTTTTTTAAAAAAAAAAAAAGGAACAACATTATC ATAGGGAATACTAAATGTAGTTAGACCCACAAAATGAAGGTTCCAGTCAATGCCCAACCATTAC TAATTAAAGTAAGCAGTAGCTATGGTGAAGATATGCTCAAGCTAAAAAGGTGATATTGTAATAT TTTTACACTGTTCCTTTTTAGTTAATGCAGTGTGTATGTGCACAAGCTAAAAAGGATTGCAAAC ATGTAACAAGCAATCTTTTTCGTCTGACACAATTCAATACTCTAATAGGTACAACTGATATGAA GTAAATGCTAAGATATAAACAGACCCGAAATTCCATTCTGCACAAGCATATGGGCCGATACGAA GAAAAAGAAATAGACCTTCGGCAGCAACCAGCTTCGCAAATTTCACAAGATCAATCTTCGCAAA TTTCACAAGATCAAATCTTTCTTCAAAGTAATACTGGGCAAAATGCATGGAACAAACATAAATT AACACTTAAGTACCAGAACCAATAGAAATGAATATTTGAGCAACTATATTACCTGACCTTTGGC TGGCTCATGGCCATTCCAAAAGACATAGGTCTCAATTACATCTGCGCCACCCTCCTTGCACTTT GCAATTAAACTAGGCCACATCTGACATAATTTGTATATCAATTAAAAGAATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.225396261

Conservation Information
Conserved circRNAs	NA
PMCS	0.225396261

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os12g0429200_circ_g.27

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