Detail information of AT1G25490_circ_g.4


General Information
CircRNA Name AT1G25490_circ_g.4
ID in PlantcircBase ath_circ_004347
Alias 1:8953177-8953482
Organism Arabidpsis thaliana
Position chr1: 8953177-8953482  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G25490
Parent gene annotation Serine/threonine-protein phosphatase 2A 65 kDa regulatory subuni
t A alpha isoform
Parent gene strand +
Alternative splicing NA
Support reads 1/1
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G25490.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATACTGATGTCTGGCAGGAATTATCATCGGATTCTTCTCAACATGTCCGCTCTGCTCTAGCT
TCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAGgacggatttggttccagcatatgtgaga
ttgctaagggacaatgaggctgaagtgcgaatagcagcagcgggaaaagtgaccaagttctgtc
ggcttttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACGGATTTGGTTCCAGCATATGTGAGATTGCTAAGGGACAATGAGGCTGAAGTGCGAATAGCA
GCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTGCGATTCAGCACATCC
TTCCTTGTGTGAAGGTAAGACTCCTTAAATTCTATATAAACGAGTTGTTTGATGTCCCCTGTCT
CGTAATATTCTGATACATACTGATGTCTGGCAGGAATTATCATCGGATTCTTCTCAACATGTCC
GCTCTGCTCTAGCTTCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.209890552
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020