Detail information of Os06g0102100_circ_g.1


General Information
CircRNA Name Os06g0102100_circ_g.1
ID in PlantcircBase osa_circ_042219
Alias NA
Organism Oryza sativa
Position chr6: 163360-163485  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0102100
Parent gene annotation Cytochrome P450 93G2 protein (CYP93G2), flavanone 2-hydroxylase
(F2H), C-glycosylflavone biosynthesis (Os06t0102100-01)
Parent gene strand +
Alternative splicing Os06g0102100_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0102100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGTCCCATGGCGCTGCCCATCATCGGCCACCTCCACCTCATCCGGCCGCCACCCCACCGCGCc
gtggtgttggcggtgatgaggtcagctggaagcagaagcagcaagcgcggtcggctgccccc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 126
Transcript exons: 163360-163485
CGTGGTGTTGGCGGTGATGAGGTCAGCTGGAAGCAGAAGCAGCAAGCGCGGTCGGCTGCCCCCG
AGTCCCATGGCGCTGCCCATCATCGGCCACCTCCACCTCATCCGGCCGCCACCCCACCGCGC

Genomic sequence CGTGGTGTTGGCGGTGATGAGGTCAGCTGGAAGCAGAAGCAGCAAGCGCGGTCGGCTGCCCCCG
AGTCCCATGGCGCTGCCCATCATCGGCCACCTCCACCTCATCCGGCCGCCACCCCACCGCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.338295966
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study