Detail information of BGIOSGA006015_circ_g.1


General Information
CircRNA Name BGIOSGA006015_circ_g.1
ID in PlantcircBase osi_circ_012018
Alias Chr02:26027428_26027758(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 26514937-26515267  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA006015
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-GA
Number of exons covered BGIOSGA006015-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCTTCGGGACACGTTTGATGTCAATCTTGATGTCGGTCAGGGAAAGCCTCTTGAAGTTGAT
CTGGCACCTGACCATGTCAGGAGCATCCACAAGTGCccttgatcttggccaacataaccttgaa
cctgtcaaagtcattgagtgacgctctcctcttctggacaattagcttcttgccccatgagcta
ttctccca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGATCTTGGCCAACATAACCTTGAACCTGTCAAAGTCATTGAGTGACGCTCTCCTCTTCTG
GACAATTAGCTTCTTGCCCCATGAGCTATTCTCCCACTTGTTCTTAACATCTTCAAAAGAATAA
CCACCACTCAGATTAGACATGGACAGAAATAAATAACTGCTGATAGGATTGGTAGCACAACATT
CATACTAACCAGCCTCCTCCATAGCCTTAATCAAAGTTGTCTTCTTCGGGACACGTTTGATGTC
AATCTTGATGTCGGTCAGGGAAAGCCTCTTGAAGTTGATCTGGCACCTGACCATGTCAGGAGCA
TCCACAAGTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021