Detail information of Os06g0622700_circ_g.9


General Information
CircRNA Name Os06g0622700_circ_g.9
ID in PlantcircBase osa_circ_031416
Alias Os_ciR10477
Organism Oryza sativa
Position chr6: 25043552-25043693  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os06g0622700
Parent gene annotation bZIP transcription factor, Endoplasmic reticulum stress response
(Os06t0622700-01);Active form of bZIP transcription factor, End
oplasmic reticulum stress response (Os06t0622700-02)
Parent gene strand +
Alternative splicing Os06g0622700_circ_g.3 Os06g0622700_circ_g.4 Os06g0622700_circ_g.5 Os06g0622700_circ_g.6 Os06g0622700_circ_g.7 Os06g0622700_circ_g.8 Os06g0622700_circ_g.10 Os06g0622700_circ_g.11 Os06g0622700_circ_g.12 Os06g0622700_circ_g.13
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0622700-02:1
Os06t0622700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGGAGGCGTT
GCAAGGGtcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcgccggaagag
atctcgcgacggta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCGGAAGAGATCTCGC
GACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAAACATTACTACTCCATGGG
AGGCGTTGCAAGGG
Conservation Information
Conserved circRNAs NA
PMCS 0.184850939
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015