Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035008_circ_g.2 |
ID in PlantcircBase | zma_circ_008870 |
Alias | Zm06circ00001, zma_circ_0002091, GRMZM2G039895_C1 |
Organism | Zea mays |
Position | chr6: 1592071-1592692 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d035008 |
Parent gene annotation |
RING/FYVE/PHD-type zinc finger family protein |
Parent gene strand | - |
Alternative splicing | Zm00001d035008_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d035008_T002:2 Zm00001d035008_T003:2 Zm00001d035008_T004:2 Zm00001d035008_T007:2 Zm00001d035008_T008:2 Zm00001d035008_T001:2 Zm00001d035008_T005:2 Zm00001d035008_T006:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.132875641 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1592671-1592110(+) 1592694-1592073(-) |
Potential amino acid sequence |
MACTTALICLISWSSSAWFCA*(+) MSAVVHAIDSQQGGRQTLGRHWRNWRDTLEGVLQSTAGKQGSGGIQSCIRAALRFSGCPPTEHG NLAHDGGAGRDDPVGAVHSEENSGALVQLEDGTAAPLEANKTMCHNALFDILISEKFAMLCDLL AATFHVSKPDDVIGLQIIDAKMRNGDYAQNHALLDHDIKQMSAVVHAIDSQQGGRQTLGRHWRN WRDTLEGVLQSTAGKQGSGGIQSCIRAALRFSGCPPTEHGNLAHDGGAGRDDPVGAVHSEENSG ALVQLEDGTAAPLEANKTMCHNALFDILISEKFAMLCDLLAATFHVSKPDDVIGLQIIDAKMRN GDYAQNHALLDHDIKQMSAVVHAIDSQQGGRQTLGRHWRNWRDTLEGVLQSTAGKQGSGGIQSC IRAALRFSGCPPTEHGNLAHDGGAGRDDPVGAVHSEENSGALVQLEDGTAAPLEANKTMCHNAL FDILISEKFAMLCDLLAATFHVSKPDDVIGLQIIDAKMRNGDYAQNHALLDHDIKQMSAVVHAI DSQQGGRQTLGRHWRNWRDTLEGVLQSTAGKQGSGGIQSCIRAALRFSGCPPTEHGNLAHDGGA GRDDPVGAVHSEENSGALVQLEDGTAAPLEANKTMCHNALFDILISEKFAMLCDLLAATFHVSK PDDVIGLQIIDAKMRNGDYAQNHALLDHDIKQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |