Detail information of AT2G02730_circ_g.1


General Information
CircRNA Name AT2G02730_circ_g.1
ID in PlantcircBase ath_circ_012602
Alias 2:766121-766370
Organism Arabidpsis thaliana
Position chr2: 766121-766370  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G02730
Parent gene annotation At2g02730
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues leaf;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02730.1:2
AT2G02730.3:2
AT2G02730.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATTCATACATTATCCTGGACTCCCTTTAAGAGATCTTTCTGCAAGTCTAGCTTATCGTCCAC
CTTCTGAAGCCGCTGGCTCAGGTGCTTCTTAGCATTcataccaccaaagatgctatgcattgcg
tcaaaatcatctccaatgttagcaagatcctcaagagccaaacccacctgttccataggtctga
aaattgtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 165
Transcript exons: 766121-766195,766281-766370
CATACCACCAAAGATGCTATGCATTGCGTCAAAATCATCTCCAATGTTAGCAAGATCCTCAAGA
GCCAAACCCACATTATCCTGGACTCCCTTTAAGAGATCTTTCTGCAAGTCTAGCTTATCGTCCA
CCTTCTGAAGCCGCTGGCTCAGGTGCTTCTTAGCATT

Genomic sequence CATACCACCAAAGATGCTATGCATTGCGTCAAAATCATCTCCAATGTTAGCAAGATCCTCAAGA
GCCAAACCCACCTGTTCCATAGGTCTGAAAATTGTTAATACCACCCTCGAAAGAAGAACTCTTA
AAACCTATTAATATTCAATGCCATATTCATACATTATCCTGGACTCCCTTTAAGAGATCTTTCT
GCAAGTCTAGCTTATCGTCCACCTTCTGAAGCCGCTGGCTCAGGTGCTTCTTAGCATT
Conservation Information
Conserved circRNAs NA
PMCS 0.244810928
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020