Plant Circular RNA Database

Detail information of Os02g0470600_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0470600_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014652
					
						Alias
						Os_ciR2866
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 15954700-15961518  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os02g0470600						
					
						Parent gene annotation
						
							Similar to phosphoinositide binding. (Os02t0470600-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0470600_circ_g.2 Os02g0470600_circ_g.3 Os02g0470600_circ_g.4 Os02g0470600_circ_g.5 						
					
						Support reads
						4
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0470600-00:12

General Information
CircRNA Name	Os02g0470600_circ_g.1
ID in PlantcircBase	osa_circ_014652
Alias	Os_ciR2866
Organism	Oryza sativa
Position	chr2: 15954700-15961518 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	Os02g0470600
Parent gene annotation	Similar to phosphoinositide binding. (Os02t0470600-00)
Parent gene strand	-
Alternative splicing	Os02g0470600_circ_g.2 Os02g0470600_circ_g.3 Os02g0470600_circ_g.4 Os02g0470600_circ_g.5
Support reads	4
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0470600-00:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CTTATTAATGGCCTGCCATTCTTCTTTTGTTAATCTCTCCTCCTCATCTAACTGCGGTTCTAGA
AGGGCATTCTCTTCAGAAGGTAATTCAGCCGAGTTCcttgcctccacttccaaggagctctaac
attacaacctcttctggatctttcttcttcctgtccaactgaaagaaatgcatagataacaaga
agtcaatg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1694
Transcript exons: 15954700-15954765,15954909-15955046,15955135-15955233,15
957316-15957412,15957870-15957979,15958076-15958303,1595
9393-15959599,15959669-15959789,15960139-15960200,159603
32-15960431,15960614-15960727,15961167-15961518
CTTGCCTCCACTTCCAAGGAGCTCTAACATTACAACCTCTTCTGGATCTTTCTTCTTCCTGTCC
AACTTTGCATACAGCGAAAGCTTCGTTTCAACCACAGAACCATTCACAAGAAGATCCACTGATC
CCAAGCTGCTCAGCCTTGGAGTGCTTGGTTCTGTTGTACTGACAGGGTCTCCTAGTATGTTCAC
TTCAGGAGGGGCAGAAGCTTGATATGTTGCTTGGACAAGCGCTTTCATCCAATTGGCCTTCTCG
ATTTCATTATGGTATTCAATTATCAGTGTGCTAGTTGATTCCAGCGCCTTCTGCATGTCCACAC
CTCTAGAACACACAGCAATACTGTAAAGAGACCCACCAACACTAGTTGATGGAACCTCAATTAC
TTGACGGCTAGCCATGCTACAACACCTTTGGTAATCCTGGGACACTTCAGACTCCAAGATGTAC
AGATACATCCCAGATAATACAACATAACTTGTATGCCATTCAGCTAGCGAATAACCAAGACCCT
TCCAAACCAATGTTCTAGCATCACCAGCTAGATCAGCAGGATACCAAGGTGCCAGGTTACAATT
TTCACAGCTATCAGAATCTTCACTATCACTTCCCTTCAACTTGCAAAGTACACCAAGTAGTTCA
ACAATCTTGCCGTATCTTTTTGGTGAGAAGTGAATATCCAGATTCGGCACTTGAAAAGAAACAC
GAGTTGATGGATAACTCGGGTGTGGAACTTTGATCTGATCAATTATCACTGACATTCCACAACG
ATCTAGAAGAGAACAAAACTGATTAGCATCAACAGTAGGACCTGACAGCACACGCTGATTTTCT
GGTACAGAATATATGTCTTCAGCTGTATCACAAACAACAAAAGCAGCCATATCCCTCCCAGCAA
TATAAAACCGTGAATATAAACTGCGTCTTTCCTCTTCACGTGTGCCGTCCCTTGTATGCAACGT
AAAATGGCCTAAATCCAGAACAAAATGTTCATTCCCCAGCAAAGGTTGACAAGTGATTAAAGGA
ATCCTAACTTTTGGTGCATCCAAATCAATATCAAGTCCAAAACTGCTCTGCTCTTCCAATACCA
TCTGAAGCTGCTCCTGAGCTCTACGTGTGACCTGCTCTATTTGCCTGTAGAGCAGTTGCTGTTT
CCATGGTTACTGTTGGGCTAACAGCTTTGCTCCGTTTAATGAACTCTAGAAACCGTTCATAGCT
TCCCTTCAAAACCGTAACATGGCATGGTGATATCTTTGCCACGAGCTGCCAATCCAGGTCCAAG
CCGACAGGCGCACGCACAAAACTGACATCTAGAGCATTACTCTTTCCCTCACTGACAACACTCT
GAGCAAGAGAACCTTCAGGAGAAGACAAACCACAATATCTCAAAGTAACATCACACCGCGTACT
CTTGGGATACAATTTCGTGACCACTTGAAGTTTCTCAAATCTACCACACAAAATTTCTGTCCGG
TCAATATTGATGATCCTTGCAGCAGCTTGGCCAATAGACACATCCACCAAGAATCGGGTTGTAT
TCGGGGAGACTTTTTCAAGGGGGGAAGACAGATCATCTTCTGGTTGGTAACTCAACAGCTTATT
AATGGCCTGCCATTCTTCTTTTGTTAATCTCTCCTCCTCATCTAACTGCGGTTCTAGAAGGGCA
TTCTCTTCAGAAGGTAATTCAGCCGAGTTC
Transcript length: 222
Transcript exons: 15954700-15954751,15961349-15961518
CTTGCCTCCACTTCCAAGGAGCTCTAACATTACAACCTCTTCTGGATCTTTCATCGGGTTGTAT
TCGGGGAGACTTTTTCAAGGGGGGAAGACAGATCATCTTCTGGTTGGTAACTCAACAGCTTATT
AATGGCCTGCCATTCTTCTTTTGTTAATCTCTCCTCCTCATCTAACTGCGGTTCTAGAAGGGCA
TTCTCTTCAGAAGGTAATTCAGCCGAGTTC
						
					

						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.						
					

			
		

Sequences
Splice junction sequence	CTTATTAATGGCCTGCCATTCTTCTTTTGTTAATCTCTCCTCCTCATCTAACTGCGGTTCTAGA AGGGCATTCTCTTCAGAAGGTAATTCAGCCGAGTTCcttgcctccacttccaaggagctctaac attacaacctcttctggatctttcttcttcctgtccaactgaaagaaatgcatagataacaaga agtcaatg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1694 Transcript exons: 15954700-15954765,15954909-15955046,15955135-15955233,15 957316-15957412,15957870-15957979,15958076-15958303,1595 9393-15959599,15959669-15959789,15960139-15960200,159603 32-15960431,15960614-15960727,15961167-15961518 CTTGCCTCCACTTCCAAGGAGCTCTAACATTACAACCTCTTCTGGATCTTTCTTCTTCCTGTCC AACTTTGCATACAGCGAAAGCTTCGTTTCAACCACAGAACCATTCACAAGAAGATCCACTGATC CCAAGCTGCTCAGCCTTGGAGTGCTTGGTTCTGTTGTACTGACAGGGTCTCCTAGTATGTTCAC TTCAGGAGGGGCAGAAGCTTGATATGTTGCTTGGACAAGCGCTTTCATCCAATTGGCCTTCTCG ATTTCATTATGGTATTCAATTATCAGTGTGCTAGTTGATTCCAGCGCCTTCTGCATGTCCACAC CTCTAGAACACACAGCAATACTGTAAAGAGACCCACCAACACTAGTTGATGGAACCTCAATTAC TTGACGGCTAGCCATGCTACAACACCTTTGGTAATCCTGGGACACTTCAGACTCCAAGATGTAC AGATACATCCCAGATAATACAACATAACTTGTATGCCATTCAGCTAGCGAATAACCAAGACCCT TCCAAACCAATGTTCTAGCATCACCAGCTAGATCAGCAGGATACCAAGGTGCCAGGTTACAATT TTCACAGCTATCAGAATCTTCACTATCACTTCCCTTCAACTTGCAAAGTACACCAAGTAGTTCA ACAATCTTGCCGTATCTTTTTGGTGAGAAGTGAATATCCAGATTCGGCACTTGAAAAGAAACAC GAGTTGATGGATAACTCGGGTGTGGAACTTTGATCTGATCAATTATCACTGACATTCCACAACG ATCTAGAAGAGAACAAAACTGATTAGCATCAACAGTAGGACCTGACAGCACACGCTGATTTTCT GGTACAGAATATATGTCTTCAGCTGTATCACAAACAACAAAAGCAGCCATATCCCTCCCAGCAA TATAAAACCGTGAATATAAACTGCGTCTTTCCTCTTCACGTGTGCCGTCCCTTGTATGCAACGT AAAATGGCCTAAATCCAGAACAAAATGTTCATTCCCCAGCAAAGGTTGACAAGTGATTAAAGGA ATCCTAACTTTTGGTGCATCCAAATCAATATCAAGTCCAAAACTGCTCTGCTCTTCCAATACCA TCTGAAGCTGCTCCTGAGCTCTACGTGTGACCTGCTCTATTTGCCTGTAGAGCAGTTGCTGTTT CCATGGTTACTGTTGGGCTAACAGCTTTGCTCCGTTTAATGAACTCTAGAAACCGTTCATAGCT TCCCTTCAAAACCGTAACATGGCATGGTGATATCTTTGCCACGAGCTGCCAATCCAGGTCCAAG CCGACAGGCGCACGCACAAAACTGACATCTAGAGCATTACTCTTTCCCTCACTGACAACACTCT GAGCAAGAGAACCTTCAGGAGAAGACAAACCACAATATCTCAAAGTAACATCACACCGCGTACT CTTGGGATACAATTTCGTGACCACTTGAAGTTTCTCAAATCTACCACACAAAATTTCTGTCCGG TCAATATTGATGATCCTTGCAGCAGCTTGGCCAATAGACACATCCACCAAGAATCGGGTTGTAT TCGGGGAGACTTTTTCAAGGGGGGAAGACAGATCATCTTCTGGTTGGTAACTCAACAGCTTATT AATGGCCTGCCATTCTTCTTTTGTTAATCTCTCCTCCTCATCTAACTGCGGTTCTAGAAGGGCA TTCTCTTCAGAAGGTAATTCAGCCGAGTTC Transcript length: 222 Transcript exons: 15954700-15954751,15961349-15961518 CTTGCCTCCACTTCCAAGGAGCTCTAACATTACAACCTCTTCTGGATCTTTCATCGGGTTGTAT TCGGGGAGACTTTTTCAAGGGGGGAAGACAGATCATCTTCTGGTTGGTAACTCAACAGCTTATT AATGGCCTGCCATTCTTCTTTTGTTAATCTCTCCTCCTCATCTAACTGCGGTTCTAGAAGGGCA TTCTCTTCAGAAGGTAATTCAGCCGAGTTC
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_003912* osi_circ_011692 						
					
						PMCS
						0.318726124

Conservation Information
Conserved circRNAs	osi_circ_003912* osi_circ_011692
PMCS	0.318726124

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15961427-15954723(+)
15960163-15961509(-)
						
						Potential amino acid sequence
						
							MACHSSFVNLSSSSNCGSRRAFSSEGNSAEFLASTSKEL*(+)
MVLEEQSSFGLDIDLDAPKVRIPLITCQPLLGNEHFVLDLGHFTLHTRDGTREEERRSLYSRFY
IAGRDMAAFVVCDTAEDIYSVPENQRVLSGPTVDANQFCSLLDRCGMSVIIDQIKVPHPSYPST
RVSFQVPNLDIHFSPKRYGKIVELLGVLCKLKGSDSEDSDSCENCNLAPWYPADLAGDARTLVW
KGLGYSLAEWHTSYVVLSGMYLYILESEVSQDYQRCCSMASRQVIEVPSTSVGGSLYSIAVCSR
GVDMQKALESTSTLIIEYHNEIEKANWMKALVQATYQASAPPEVNILGDPVSTTEPSTPRLSSL
GSVDLLVNGSVVETKLSLYAKLDRKKKDPEEVVMLELLGSGGKELG*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15961427-15954723(+) 15960163-15961509(-)
Potential amino acid sequence	MACHSSFVNLSSSSNCGSRRAFSSEGNSAEFLASTSKEL(+) MVLEEQSSFGLDIDLDAPKVRIPLITCQPLLGNEHFVLDLGHFTLHTRDGTREEERRSLYSRFY IAGRDMAAFVVCDTAEDIYSVPENQRVLSGPTVDANQFCSLLDRCGMSVIIDQIKVPHPSYPST RVSFQVPNLDIHFSPKRYGKIVELLGVLCKLKGSDSEDSDSCENCNLAPWYPADLAGDARTLVW KGLGYSLAEWHTSYVVLSGMYLYILESEVSQDYQRCCSMASRQVIEVPSTSVGGSLYSIAVCSR GVDMQKALESTSTLIIEYHNEIEKANWMKALVQATYQASAPPEVNILGDPVSTTEPSTPRLSSL GSVDLLVNGSVVETKLSLYAKLDRKKKDPEEVVMLELLGSGGKELG(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os02g0470600_circ_g.1

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