Detail information of AT2G40360_circ_g.1


General Information
CircRNA Name AT2G40360_circ_g.1
ID in PlantcircBase ath_circ_017617
Alias Ath_circ_FC1601
Organism Arabidpsis thaliana
Position chr2: 16853938-16854654  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G40360
Parent gene annotation Ribosome biogenesis protein BOP1 homolog
Parent gene strand -
Alternative splicing AT2G40360_circ_g.2
Support reads 6
Tissues whole_plant
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered AT2G40360.2:4
AT2G40360.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTATGGCCTTTATATTCAAGATAACAGGAGTTAGGATAAGGTCTAAGATCCTTCCTACTAGG
TAGCTTAGGCTTCAAAGATTCAGGGTCGATGTTTATccttaaaatgtcttatcttaatccctcc
atataactcatcaggtagccaggttacaattgctgcaactatgaagtcgtgcaaaacataccaa
ccaaaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTAAAATGTCTTATCTTAATCCCTCCATATAACTCATCAGGTAGCCAGGTTACAATTGCTGC
AACTATGAAGTCGTGCAAAACATACCAACCAAAAAGATTTAATCATTTGGAATTTCATCACAAT
TACATACGAGATGATGGCAGTTATTCCAAGCCACTTACCAGATGCGTCTGGTTCTGGGATGTTT
CCTGAGTGAAGCCTCTCTTTAGTAATTTCCTGTTCCTCATCAGTCCCAAGTTCAGTGTTCAGAA
AAAACAAATCTCGTCCCCTGCAATGTGAGATGAGAAGGTTTCACAACAGACAATTATAATAAAT
TCAAAAGCATATTCACAAGATCCTCACTCACATGGCAACGGCTAAAACTGGAAGCCTGGAAAGA
GGATTCCAAGCCACACACATGATAGCTTCGTCAAACTGCCAGACCTTAAGGCATCTACCAGTCT
CCACTTCCCACATACGGACAGATCCATCAGTTGAACCTTTGAAGGAAAAAAGAATACAAGATTA
GCATCTTGAAAACAAAAGAGACCTCATTGAAAAAAAAAAAAAATAATGAAATACCTGAGGCTAT
CCACTCGCCAGAACTATCAGTGGATATTGAAGTAACAGCCCCTGTATGGCCTTTATATTCAAGA
TAACAGGAGTTAGGATAAGGTCTAAGATCCTTCCTACTAGGTAGCTTAGGCTTCAAAGATTCAG
GGTCGATGTTTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.161930136
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a