Plant Circular RNA Database

Detail information of Zm00001d030266_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d030266_circ_g.1
					
						ID in PlantcircBase
						zma_circ_006600
					
						Alias
						zma_circ_0000231
					
						Organism
						
							Zea mays						
					
						Position
						
							chr1: 117627365-117629499  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Zm00001d030266						
					
						Parent gene annotation
						
							Callose synthase 10
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d030266_T061:3
Zm00001d030266_T057:3
Zm00001d030266_T001:3
Zm00001d030266_T028:3
Zm00001d030266_T023:3
Zm00001d030266_T050:3
Zm00001d030266_T014:3
Zm00001d030266_T011:3
Zm00001d030266_T063:3
Zm00001d030266_T054:3
Zm00001d030266_T066:3
Zm00001d030266_T013:3
Zm00001d030266_T052:3
Zm00001d030266_T059:3
Zm00001d030266_T032:3
Zm00001d030266_T039:3
Zm00001d030266_T008:3
Zm00001d030266_T016:3
Zm00001d030266_T004:3
Zm00001d030266_T033:3
Zm00001d030266_T056:3
Zm00001d030266_T005:3
Zm00001d030266_T018:3
Zm00001d030266_T031:3
Zm00001d030266_T068:3
Zm00001d030266_T019:3
Zm00001d030266_T064:3
Zm00001d030266_T021:3
Zm00001d030266_T007:3
Zm00001d030266_T035:3
Zm00001d030266_T048:3
Zm00001d030266_T041:3
Zm00001d030266_T045:3
Zm00001d030266_T025:3
Zm00001d030266_T036:3
Zm00001d030266_T027:3
Zm00001d030266_T047:3
Zm00001d030266_T069:2

General Information
CircRNA Name	Zm00001d030266_circ_g.1
ID in PlantcircBase	zma_circ_006600
Alias	zma_circ_0000231
Organism	Zea mays
Position	chr1: 117627365-117629499 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d030266
Parent gene annotation	Callose synthase 10
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d030266_T061:3 Zm00001d030266_T057:3 Zm00001d030266_T001:3 Zm00001d030266_T028:3 Zm00001d030266_T023:3 Zm00001d030266_T050:3 Zm00001d030266_T014:3 Zm00001d030266_T011:3 Zm00001d030266_T063:3 Zm00001d030266_T054:3 Zm00001d030266_T066:3 Zm00001d030266_T013:3 Zm00001d030266_T052:3 Zm00001d030266_T059:3 Zm00001d030266_T032:3 Zm00001d030266_T039:3 Zm00001d030266_T008:3 Zm00001d030266_T016:3 Zm00001d030266_T004:3 Zm00001d030266_T033:3 Zm00001d030266_T056:3 Zm00001d030266_T005:3 Zm00001d030266_T018:3 Zm00001d030266_T031:3 Zm00001d030266_T068:3 Zm00001d030266_T019:3 Zm00001d030266_T064:3 Zm00001d030266_T021:3 Zm00001d030266_T007:3 Zm00001d030266_T035:3 Zm00001d030266_T048:3 Zm00001d030266_T041:3 Zm00001d030266_T045:3 Zm00001d030266_T025:3 Zm00001d030266_T036:3 Zm00001d030266_T027:3 Zm00001d030266_T047:3 Zm00001d030266_T069:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCTATTCTGATGCATGTGTAGGTCACGCTCATGCTTTGAGCTTGGTTGGCCACCTGCAGAGGGT
TCCAAATTTTTGCGCAAGCCTGCTAAGAGGAAACGTatggcaaaggaactcgatgggattcttg
attcatctgttgctgagactgcaaagagttgcactactgagggttccacttcatttcttgagaa
aataatta

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATGGCAAAGGAACTCGATGGGATTCTTGATTCATCTGTTGCTGAGACTGCAAAGAGTTGCACTA
CTGAGGGTTCCACTTCATTTCTTGAGAAAATAATTACACCAATTTATGATACCATGGCAGCGGT
AGGTTCATGTATTAAAGGTTCTATCTTGATTTACTTTTTTTATAGAAAAAGCAGAAGGGCCTTT
AGCTGAGTTGGTTAGGTAGTCTGAGTAGCACTTGGGTCCTGAGTTTGACTCCCTGTCGGAGCGA
ATTTCAGGTTAGGGTTAAAAAAAATCCCCCTGTGTGTCCCATGACAAAGCCCAGGTCTAAGGTT
TGGCCCTGCCCACGATTGTTCTCACATGGACATGGGCTACGATGCTGCTGTGAATGGGTGGGGC
AGAGGTTTGAGAGCTTTCTCGACCTGTGTGAGGTCTTCTTAATACAGTGCCCGATGTTTGTCTT
ACCCCCATTGGTCGAGTTTTTTTAGAAAGAACAGGGCTGCTATTAGATCTTGATCAGTATGGTC
TCCCTAATTGTATTTCTGGCTGCATTTAGATTGACAATGGACTTTGGTGTTTGTTCACTTCAAA
CAGTAAATATTCACTGCAATTCGCTTTTACTGTGTATTTATGCAAGATCCTGGTTCAGCTAGGG
ACCAAATCTATCTGGCAAATTGTGAAACCTTCATGGAATGTTTTAGCACTCTAGCCATTTCATT
TCCCAGAAGAGAAAAAAGTTGTCCGTGGCCTGGAACAACATTTCTTCTTTCCCCTTTGAGTTGC
TAGATTGTTATATTTCTTGCTATTAAGTTATTAGCATGATTTGCACTTGTTTTTTAGTCCACAG
GAGTAACTCTTGACTTCTTGAGTAAGATGTAGGCACGTAGCATTTTTTTCTTAGAACTAGTGAC
CAAATTTAATTCTAATTGCACATTTACACTGTAAAGATGTTCTGCTCATGGTGCTTTGCGTTAA
TGGTGTTGTTCGGTGCTTCAAGATTATAGTACTCTGTTTTATTTTGTTATCAATTTTCGCTCAA
TGTTTAATTGGGCCTATTTAGAAATAGTTTGGTCTAGTAAGACATGTGGCATCTATCTAATCCT
ACGATCTGCCTGTGTGTTAAGCTTTTCTCTTGGGTAAATTAGCCATTTACATTCCAATAACTTA
ACTGTGTTGGATTTTTAAACTAGCTACCATGCCCGTGCGTTGCAACTTGAGTGTACTATTATCA
TACATTTCAATACGTCCTGCAATTTAACTCTTTACTGTGGCTAGGCGCACACTATTCTAACTTG
TAGTCATGGATGGGACAGTAAACCTAGAGCTCATATCTAATTCATCATGTACTACTATTCTTAT
TAAAATCATTGTGGATGGACATATAGGAGAGAGAGACGGACAGAGAGACAGGAATAAGTTCTCC
TTTTTTAAAAAATCTTGATCTGTTGTGTGTGTGTGTGTGGGGGGGGGGGTGATAGGCATCGACA
TTACATTAAGAAGACCTTCTCATGCCGGTCAAGAAAACCCCTAAACCTTTGCTCCATCCATACA
CAACGGCACCGTAGTCCATGTGAGGACGACCGCGATCAGGACCAGGTCTTTCCTATGCTTTGGC
GTGAGATAGGGAATTTTTTAACCTTAGCGTAAAATTCGCTATCACGGAGAGTTGAGAACTCAGG
ACCTGAGGAGTGCTACTCAGACAACCTAACCAACTCAGCTATAGACCCTTTCGCGAAGTTTCTT
CTTTTAATATTACGTGTATAGATATAGATATGGGTGTTGGGAGACCCAACAACCACCTTAGATT
TTTTGTCGCCCTATTGAATATTTTTGGATTTTGTATCAACCACCTTAGATTTTTTGTTGCCCTA
TTGACTATTTTTGGATTTTATATACTGTACATAGGAGGCTGAAAATAATAAAGATGGAAAAGCT
GCACATTCTGCTTGGAGGAATTATGATGACTTCAATGAATATTTCTGGTTTGTCTTCAAACGTG
CTTTTCTGTTGTTTGTTTGTATATCCTTTTCTTTCCTGTCTTGATGCCTTCCCTATTCTGATGC
ATGTGTAGGTCACGCTCATGCTTTGAGCTTGGTTGGCCACCTGCAGAGGGTTCCAAATTTTTGC
GCAAGCCTGCTAAGAGGAAACGT
						
					

			
		

Sequences
Splice junction sequence	CCTATTCTGATGCATGTGTAGGTCACGCTCATGCTTTGAGCTTGGTTGGCCACCTGCAGAGGGT TCCAAATTTTTGCGCAAGCCTGCTAAGAGGAAACGTatggcaaaggaactcgatgggattcttg attcatctgttgctgagactgcaaagagttgcactactgagggttccacttcatttcttgagaa aataatta
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATGGCAAAGGAACTCGATGGGATTCTTGATTCATCTGTTGCTGAGACTGCAAAGAGTTGCACTA CTGAGGGTTCCACTTCATTTCTTGAGAAAATAATTACACCAATTTATGATACCATGGCAGCGGT AGGTTCATGTATTAAAGGTTCTATCTTGATTTACTTTTTTTATAGAAAAAGCAGAAGGGCCTTT AGCTGAGTTGGTTAGGTAGTCTGAGTAGCACTTGGGTCCTGAGTTTGACTCCCTGTCGGAGCGA ATTTCAGGTTAGGGTTAAAAAAAATCCCCCTGTGTGTCCCATGACAAAGCCCAGGTCTAAGGTT TGGCCCTGCCCACGATTGTTCTCACATGGACATGGGCTACGATGCTGCTGTGAATGGGTGGGGC AGAGGTTTGAGAGCTTTCTCGACCTGTGTGAGGTCTTCTTAATACAGTGCCCGATGTTTGTCTT ACCCCCATTGGTCGAGTTTTTTTAGAAAGAACAGGGCTGCTATTAGATCTTGATCAGTATGGTC TCCCTAATTGTATTTCTGGCTGCATTTAGATTGACAATGGACTTTGGTGTTTGTTCACTTCAAA CAGTAAATATTCACTGCAATTCGCTTTTACTGTGTATTTATGCAAGATCCTGGTTCAGCTAGGG ACCAAATCTATCTGGCAAATTGTGAAACCTTCATGGAATGTTTTAGCACTCTAGCCATTTCATT TCCCAGAAGAGAAAAAAGTTGTCCGTGGCCTGGAACAACATTTCTTCTTTCCCCTTTGAGTTGC TAGATTGTTATATTTCTTGCTATTAAGTTATTAGCATGATTTGCACTTGTTTTTTAGTCCACAG GAGTAACTCTTGACTTCTTGAGTAAGATGTAGGCACGTAGCATTTTTTTCTTAGAACTAGTGAC CAAATTTAATTCTAATTGCACATTTACACTGTAAAGATGTTCTGCTCATGGTGCTTTGCGTTAA TGGTGTTGTTCGGTGCTTCAAGATTATAGTACTCTGTTTTATTTTGTTATCAATTTTCGCTCAA TGTTTAATTGGGCCTATTTAGAAATAGTTTGGTCTAGTAAGACATGTGGCATCTATCTAATCCT ACGATCTGCCTGTGTGTTAAGCTTTTCTCTTGGGTAAATTAGCCATTTACATTCCAATAACTTA ACTGTGTTGGATTTTTAAACTAGCTACCATGCCCGTGCGTTGCAACTTGAGTGTACTATTATCA TACATTTCAATACGTCCTGCAATTTAACTCTTTACTGTGGCTAGGCGCACACTATTCTAACTTG TAGTCATGGATGGGACAGTAAACCTAGAGCTCATATCTAATTCATCATGTACTACTATTCTTAT TAAAATCATTGTGGATGGACATATAGGAGAGAGAGACGGACAGAGAGACAGGAATAAGTTCTCC TTTTTTAAAAAATCTTGATCTGTTGTGTGTGTGTGTGTGGGGGGGGGGGTGATAGGCATCGACA TTACATTAAGAAGACCTTCTCATGCCGGTCAAGAAAACCCCTAAACCTTTGCTCCATCCATACA CAACGGCACCGTAGTCCATGTGAGGACGACCGCGATCAGGACCAGGTCTTTCCTATGCTTTGGC GTGAGATAGGGAATTTTTTAACCTTAGCGTAAAATTCGCTATCACGGAGAGTTGAGAACTCAGG ACCTGAGGAGTGCTACTCAGACAACCTAACCAACTCAGCTATAGACCCTTTCGCGAAGTTTCTT CTTTTAATATTACGTGTATAGATATAGATATGGGTGTTGGGAGACCCAACAACCACCTTAGATT TTTTGTCGCCCTATTGAATATTTTTGGATTTTGTATCAACCACCTTAGATTTTTTGTTGCCCTA TTGACTATTTTTGGATTTTATATACTGTACATAGGAGGCTGAAAATAATAAAGATGGAAAAGCT GCACATTCTGCTTGGAGGAATTATGATGACTTCAATGAATATTTCTGGTTTGTCTTCAAACGTG CTTTTCTGTTGTTTGTTTGTATATCCTTTTCTTTCCTGTCTTGATGCCTTCCCTATTCTGATGC ATGTGTAGGTCACGCTCATGCTTTGAGCTTGGTTGGCCACCTGCAGAGGGTTCCAAATTTTTGC GCAAGCCTGCTAAGAGGAAACGT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.040204754

Conservation Information
Conserved circRNAs	NA
PMCS	0.040204754

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							117627366-117629496(+)
117627475-117627458(+)
						
						Potential amino acid sequence
						
							MAKELDGILDSSVAETAKSCTTEGSTSFLEKIITPIYDTMAAEAENNKDGKAAHSAWRNYDDFN
EYFWSRSCFELGWPPAEGSKFLRKPAKRKRMAKELDGILDSSVAETAKSCTTEGSTSFLEKIIT
PIYDTMAAEAENNKDGKAAHSAWRNYDDFNEYFWSRSCFELGWPPAEGSKFLRKPAKRKRMAKE
LDGILDSSVAETAKSCTTEGSTSFLEKIITPIYDTMAAEAENNKDGKAAHSAWRNYDDFNEYFW
SRSCFELGWPPAEGSKFLRKPAKRKRMAKELDGILDSSVAETAKSCTTEGSTSFLEKIITPIYD
TMAAEAENNKDGKAAHSAWRNYDDFNEYFWSRSCFELGWPPAEGSKFLRKPAKRKR(+)
MIPWQRRLKIIKMEKLHILLGGIMMTSMNISGHAHALSLVGHLQRVPNFCASLLRGNVWQRNSM
GFLIHLLLRLQRVALLRVPLHFLRK*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	117627366-117629496(+) 117627475-117627458(+)
Potential amino acid sequence	MAKELDGILDSSVAETAKSCTTEGSTSFLEKIITPIYDTMAAEAENNKDGKAAHSAWRNYDDFN EYFWSRSCFELGWPPAEGSKFLRKPAKRKRMAKELDGILDSSVAETAKSCTTEGSTSFLEKIIT PIYDTMAAEAENNKDGKAAHSAWRNYDDFNEYFWSRSCFELGWPPAEGSKFLRKPAKRKRMAKE LDGILDSSVAETAKSCTTEGSTSFLEKIITPIYDTMAAEAENNKDGKAAHSAWRNYDDFNEYFW SRSCFELGWPPAEGSKFLRKPAKRKRMAKELDGILDSSVAETAKSCTTEGSTSFLEKIITPIYD TMAAEAENNKDGKAAHSAWRNYDDFNEYFWSRSCFELGWPPAEGSKFLRKPAKRKR(+) MIPWQRRLKIIKMEKLHILLGGIMMTSMNISGHAHALSLVGHLQRVPNFCASLLRGNVWQRNSM GFLIHLLLRLQRVALLRVPLHFLRK*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d030266_circ_g.1

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