Detail information of AT1G79280_circ_g.4


General Information
CircRNA Name AT1G79280_circ_g.4
ID in PlantcircBase ath_circ_010956
Alias NA
Organism Arabidpsis thaliana
Position chr1: 29821461-29821542  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE
Parent gene AT1G79280
Parent gene annotation nuclear pore anchor
Parent gene strand -
Alternative splicing AT1G79280_circ_g.5 AT1G79280_circ_g.6
Support reads 6
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G79280.3:1
AT1G79280.2:1
AT1G79280.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGTTTGCTCAATTCATCCTTCTCTTTTTCGTATTTTCTcctcttctttggcttcttccaac
tgtttagcgagtgactgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTTCTTTGGCTTCTTCCAACTGTTTAGCGAGTGACTGGTTTTGTTTGCTCAATTCATCCTT
CTCTTTTTCGTATTTTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.233475544
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017