Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os10g0521400_circ_g.1 |
ID in PlantcircBase | osa_circ_007713 |
Alias | NA |
Organism | Oryza sativa |
Position | chr10: 20176545-20177024 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ei-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os10g0521450 |
Parent gene annotation |
Hypothetical gene. (Os10t0521450-00) |
Parent gene strand | - |
Alternative splicing | Os10g0521450_circ_ag.1 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0521400-01:1 Os10t0521400-01:1 Os10t0521450-00:1 |
Conservation Information | |
---|---|
Conserved circRNAs | osi_circ_008611 |
PMCS | 0.299548872 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
20176573-20177021(+) 20176575-20176795(-) |
Potential amino acid sequence |
MVAFDRAGYGESDPNPNRTVKSAALDMAELADALGLGDKFYVVGVSLGSHAVWGALRYIPERIA GAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGDQWALRVSHHAPAILHWWMDQSWLPTSTVVDNT TFLPNKRDADIRRTLTADGTLQKEVAEELGVYMVAFDRAGYGESDPNPNRTVKSAALDMAELAD ALGLGDKFYVVGVSLGSHAVWGALRYIPERIAGAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGD QWALRVSHHAPAILHWWMDQSWLPTSTVVDNTTFLPNKRDADIRRTLTADGTLQKEVAEELGVY MVAFDRAGYGESDPNPNRTVKSAALDMAELADALGLGDKFYVVGVSLGSHAVWGALRYIPERIA GAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGDQWALRVSHHAPAILHWWMDQSWLPTSTVVDNT TFLPNKRDADIRRTLTADGTLQKEVAEELGVYMVAFDRAGYGESDPNPNRTVKSAALDMAELAD ALGLGDKFYVVGVSLGSHAVWGALRYIPERIAGAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGD QWALRVSHHAPAILHWWMDQSWLPTSTVVDNTTFLPNKRDADIRRTLTADGTLQK(+) MYTPSSSATSFWRVPSAVRVRRMSASRLLGRKVVLSTTVEVGSQLWSIHQWRMAGAWCDTRSAH WSPYDCLPYAAAASSAGNPGHQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |