Detail information of Os10g0521400_circ_g.1


General Information
CircRNA Name Os10g0521400_circ_g.1
ID in PlantcircBase osa_circ_007713
Alias NA
Organism Oryza sativa
Position chr10: 20176545-20177024  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer
Parent gene Os10g0521450
Parent gene annotation Hypothetical gene. (Os10t0521450-00)
Parent gene strand -
Alternative splicing Os10g0521450_circ_ag.1
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0521400-01:1
Os10t0521400-01:1
Os10t0521450-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCCCCACCTCCACCGTCGTCGACAACACCACCTTCCTCCCCAACAAGCGCGACGCCGACATC
CGCCGCACCCTCACCGCCGACGGCACCCTCCAAAAGgaagtggctgaagagctgggcgtgtaca
tggtcgccttcgaccgcgccggctacggcgagagcgacccgaacccgaaccgcaccgtcaagag
cgcggcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTGGCTGAAGAGCTGGGCGTGTACATGGTCGCCTTCGACCGCGCCGGCTACGGCGAGAGCG
ACCCGAACCCGAACCGCACCGTCAAGAGCGCGGCGCTGGACATGGCGGAGCTCGCCGACGCGCT
GGGCCTCGGCGACAAGTTCTACGTCGTCGGCGTGTCCCTCGGCAGCCACGCCGTGTGGGGCGCG
CTCAGGTACATCCCGGAGAGGATCGCCGGGGCGGCGATGATGGCGCCCGTGGTGAACTACTGGT
GGCCCGGGTTCCCGGCGGAGGACGCCGCGGCGGCGTACGGCAGGCAGTCGTACGGCGACCAGTG
GGCGCTCCGCGTGTCGCACCACGCCCCGGCCATCCTCCACTGGTGGATGGACCAGAGCTGGCTC
CCCACCTCCACCGTCGTCGACAACACCACCTTCCTCCCCAACAAGCGCGACGCCGACATCCGCC
GCACCCTCACCGCCGACGGCACCCTCCAAAAG
Conservation Information
Conserved circRNAs osi_circ_008611
PMCS 0.299548872
Functional Information
Coding potential Y
Potential coding position 20176573-20177021(+)
20176575-20176795(-)
Potential amino acid sequence MVAFDRAGYGESDPNPNRTVKSAALDMAELADALGLGDKFYVVGVSLGSHAVWGALRYIPERIA
GAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGDQWALRVSHHAPAILHWWMDQSWLPTSTVVDNT
TFLPNKRDADIRRTLTADGTLQKEVAEELGVYMVAFDRAGYGESDPNPNRTVKSAALDMAELAD
ALGLGDKFYVVGVSLGSHAVWGALRYIPERIAGAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGD
QWALRVSHHAPAILHWWMDQSWLPTSTVVDNTTFLPNKRDADIRRTLTADGTLQKEVAEELGVY
MVAFDRAGYGESDPNPNRTVKSAALDMAELADALGLGDKFYVVGVSLGSHAVWGALRYIPERIA
GAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGDQWALRVSHHAPAILHWWMDQSWLPTSTVVDNT
TFLPNKRDADIRRTLTADGTLQKEVAEELGVYMVAFDRAGYGESDPNPNRTVKSAALDMAELAD
ALGLGDKFYVVGVSLGSHAVWGALRYIPERIAGAAMMAPVVNYWWPGFPAEDAAAAYGRQSYGD
QWALRVSHHAPAILHWWMDQSWLPTSTVVDNTTFLPNKRDADIRRTLTADGTLQK(+)
MYTPSSSATSFWRVPSAVRVRRMSASRLLGRKVVLSTTVEVGSQLWSIHQWRMAGAWCDTRSAH
WSPYDCLPYAAAASSAGNPGHQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017