Detail information of AT1G48310_circ_g.2


General Information
CircRNA Name AT1G48310_circ_g.2
ID in PlantcircBase ath_circ_006284
Alias NA
Organism Arabidpsis thaliana
Position chr1: 17850276-17852927  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT1G48310
Parent gene annotation chromatin remodeling factor18
Parent gene strand -
Alternative splicing AT1G48310_circ_g.3 AT1G48310_circ_g.4
Support reads 1
Tissues inflorescences
Exon boundary   No-No
Splicing signals   AC-GT
Number of exons covered AT1G48310.1:13
AT1G48310.2:13
AT1G48310.3:13
AT1G48310.4:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTTTAACGAATCAATGTGGCTTACCTCAACTTTAACGCTGGAAATTTCTCGTAGAATATTTT
CTGCTGAAGACAGTGAAGAATGAGGAAAGGTCCATAaccttgttaataaggttcttctctataa
atttcagagatttaatgtcatcttctgatatgcaatccttaatttttgactttaccacctttaa
ctgtaaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACCTTGTTAATAAGGTTCTTCTCTATAAATTTCAGAGATTTAATGTCATCTTCTGATATGCAAT
CCTTAATTTTTGACTTTACCACCTTTAACTGTAAACGAGAAAGTAAACCTCATTTCTTTTCTCA
AAAACATTCGTCGAGGAAGGTAATTAGTATAAGTATTAAAAACTAAATCAAGTTACCTCATGAA
ACAAAGCGTTGATTTGCTTCATGTCTTTTGCAGCTAAATCTAGGAAGACCTAATCAAACAAAGA
TAAAATTAACAATGTAAAACGAAATCATAAACAAGTACTAAAGATACCACATTAGATGTGTGGA
CTTAGAGAAAGAGTTACGACTAATAACCTGCTGCCTGCGCTTTGACGGAAGTTCAGTTAAGACA
TCCTTTTTAAGTCTTCTAATCATGACTGTTGCCTTCATCAAATTGTGCAACTCGTCATGATTGC
TTGCGCCTTGATATGTTCCAAAAAATCCCTGAAAATTTGAATAACATAATATAAATTTTATGAT
GCACAGGAGCTACCTTATATGAACTTCTAGGTAGTTTCTCAATGTGCAATGGACTTACGCCTTT
GCAGTATCTGCCACCGTATTCATGAATATTTCTATAAACATCTGGATATAGAGCTTCCAGCTGC
CAAGAGGAAAGAACAAAAGGAGTATTTAGTTAATCAAATTACATCCAGAGATACACAAGGTCCC
TCGCAAATCCAAATAAAATAAAGAAATGGGGACTAATAAAATGGAAGGATCACCTGTTTGAATA
GCTCTATTGGTCTAGATAAAGCAGGAGTTCCACTCAGAAGGATGGCATATTGAGCTTTCTGAAA
TAAAAGGATGAGGTATGGATCTTAATAGAATAGAACAAACCACGAGAATATTACTCGTTAATAA
TGTAACAAAAGTATCACAGTTGCACCAAGAAGAAACTGATTTTCCAATTCTGTTGGCTGATAAC
TAAAACTAGCTTGGTAGGCAAAACAATGAGTGAATGATATATCAATAATACCTTTATGACTGGA
AGGCAAGCACTTGTCCTCTTTGCTTGACCGTTTTTAAGAAAATGTGATTCGTCTGCTATAACGA
CCTGAAACAAAGGACTTGTACATAGTAAAACCTCAAATATTTGAGACAGACACTACAAGCCTTA
TTTGCAAATTACAGATCACAGAATCTATATATGCCTCTTTCCTGTCAATTCCTTATATTAGCTT
CTCCTCTTAAAATTCAAAAGTCTCAATTTCACATAATTAACAGGTAACCAACGCGATCATTATA
AATCAAGATATTGGGAACAATCAACAAAAATATCAGAACGAAGCAATGTCTAGGTAATCACCTT
AAAGTCCAATGCCATTAAGAGTTTGTCCAGCTTAGTGACCACATCATAGGAAACAATATTGAAG
ACACCATCAAGATGGATTGTGCCCTTTGTGTTTGAGGAAACTATAGTAAATCCGCACTTGTTTG
ATCCACCTGGTTGAGGTAAAACTACCTACTAAAAGGATAACTTAGATGAGAGCGAAAATAATAT
AGAATAGATATGTTCTAGCTACAAGTAATATACAAGAACTAAACTACATACAACTATGTCTGAC
GGAGGCACATGCAGCCATTGGTGAATCATCTGCAAGAAAGCAGCATTATGAATCATCTCCAGTG
TCATAAACAATGTCCAAGTAGAATTCAAATATCGTAAGCTTACTGTTGCCCAATGTAAACGTAA
TGAAGATGGTGCAATAATCAGAACCGGCCAAGATTCCTGAACGCATGTTGTCACAGCAATTGCC
TGCACAGATAATGGATGTAAAATGAGATTGATGTAAAAAGATGATACAAGCAATTCTCCTAAAT
AAGTTTCTCGCTGGTTTTGCAAGGAGCCATACTTGTTAGACTAATTATATGATATATGTGTAAC
AATGTCAAAGAGATCTGCTCACAAGTGACAATAGAAATCTTCTCCAATGAAAGGGGAGTAGGAT
TCTCAAAAATTAAGAAATGAAAAGATATATAGGAAACAACTTGCCTGCAAAGTCTTTCCCAGAC
CCATTTCATCTGCTAGGAGCACACGTCCTCCGTGCTGTAAAATAAACCTTGCGAGAAAGGTGGA
GACCAATAATGAGGCAAAAGTCATCAGGCAGCCAGAGCAAGTTACTACTCATTTGGTAATAAAG
AAAAACCACAGGTACTACATATGGCTGACATACTCTATGCCTTCTCGCTGAAAAGGAAGAAGCT
TTGGCTCAATATGGCTTGGTATCTTTTCATACAGATCTAGGGAAATCAGAAAACAAGAGATAGT
AAGACATGAAAATCCCTTAAAAGTGGTCCAAAAATGAACATATCTTTAGGTAAAATCACGTCGC
TAATGCTTATGAAGTGATAAACAGGATGCCTGACTTACGCCGTAGATCCGGAACTCTTGAGGCA
GAAGCTATTGCACGTTGCACAAGAGGATCTAAGTTCTCTATCTGATAGTTCAAGGGACAAAATG
TATAGCAAATGTATCTAAGAAACGCTTGACCTAGTTTAAGCTGAACTTTCTGAAGCAGTTTTAA
CGAATCAATGTGGCTTACCTCAACTTTAACGCTGGAAATTTCTCGTAGAATATTTTCTGCTGAA
GACAGTGAAGAATGAGGAAAGGTCCATA
Conservation Information
Conserved circRNAs NA
PMCS 0.130491616
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017