Detail information of Os03g0191000_circ_g.1


General Information
CircRNA Name Os03g0191000_circ_g.1
ID in PlantcircBase osa_circ_018303
Alias NA
Organism Oryza sativa
Position chr3: 4728831-4731219  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0191000
Parent gene annotation Similar to CG-1 protein (Fragment). (Os03t0191000-01)
Parent gene strand -
Alternative splicing Os03g0191000_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0191000-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCGGTAGTTTGTGAAGGCAATTGACTTAAAGGGCTATCCGCATGAGATGCTTGCAGTACATC
ATCATGTCCCGTACTACGAGAGCTTAATTTTCCAGCcctagtctttgaacctgcatatgtccag
gttggagaaaaatcaactatagtaaacagctgatcttgtgcaagcactggtcccagagtatact
gatcactg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 966
Transcript exons: 4728831-4729193,4730412-4730739,4730833-4730956,4731069-
4731219
CCTAGTCTTTGAACCTGCATATGTCCAGGTTGGAGAAAAATCAACTATAGTAAACAGCTGATCT
TGTGCAAGCACTGGTCCCAGAGTATACTGATCACTGCTTGATGCTTCAATGATATTGTCAGCTT
CTTCACTGTTCCAGTACACTCCAGAACTAGATGTGATTTGAGAATCATCTACTTCAGCAAGCTC
TTTGCTCATCCATCTAGTGAAACTGTCATTTTTCTTAAAACTGTCCTTTATGATATCAGAAAGA
CTAGATGATTGAGTTTTCAAGAGAGGGTAATTAATGGCTTCCTCCAAAGTTTTATCATTTTGTT
GAAAGCTGTCCGCTGTAGCAAATGTACCACTTGCATTTGGAATCTGCCATGGAGTTTCTCCATC
TGTATCATCACCATCTACATCCTTGATACTCAGTCCATTGTTGTATACTTCATCAAATGTGAAA
GATTCAATTCCTGGGCCTCCTGTAAAAGGAGACTGTTCGGAGGGAACAGGAGCTTGGTAAAGAG
GAATTTGATGGGTCCCTTTGTCAGGTTTCATTGCTTCAATCCATAATGATAGATCAAACTGACT
ATTAGGGCCATTAAATGCAGTCCCAAGGTCTGACTCGTTAAGAACCACGGGTAAGTTATCTTGA
CCATGAGAATAGAAGCCTGTATTAGGTGCTGTAGCCTGTAATCCTTGATAATTGCCTACAGATG
ACGCAGGAACATAAGAGCTGAATATAGAATCATCAATCACAGATCCACCTCCATTTTCATGCTG
CCGCATCCGAGAGAAAGAGTTGTATCTGGCTCCTCCCGAATAAATATCTGATTCTGTTTCATCA
TATTCAGAGGCCTGTCCGCTAACTGAGCTTTCTCCTTCGGTAGTTTGTGAAGGCAATTGACTTA
AAGGGCTATCCGCATGAGATGCTTGCAGTACATCATCATGTCCCGTACTACGAGAGCTTAATTT
TCCAGC

Genomic sequence CCTAGTCTTTGAACCTGCATATGTCCAGGTTGGAGAAAAATCAACTATAGTAAACAGCTGATCT
TGTGCAAGCACTGGTCCCAGAGTATACTGATCACTGCTTGATGCTTCAATGATATTGTCAGCTT
CTTCACTGTTCCAGTACACTCCAGAACTAGATGTGATTTGAGAATCATCTACTTCAGCAAGCTC
TTTGCTCATCCATCTAGTGAAACTGTCATTTTTCTTAAAACTGTCCTTTATGATATCAGAAAGA
CTAGATGATTGAGTTTTCAAGAGAGGGTAATTAATGGCTTCCTCCAAAGTTTTATCATTTTGTT
GAAAGCTGTCCGCTGTAGCAAATGTACCACTTGCATTTGGAATCTGAAATTCAGTAGCTTCTCA
GTTATGTACCAAAACCAAAAAGAATCCTGACAAAATATTATATATATATATATATATAGTACAA
TACTAGTAAGATGAAACTCATGAAGCTGCAATTAAGTGCAGTATGCAAAACAATCAACAATATA
AACTTGCGAAGATCTCAAGTGCTAGCAAGACAACAAAGAGAAGTAGTTTTATCCATCAAAAAAC
AAAACCAGGCGCTCGCTTATAAAGATATATACACATATATATGCCAATTGGAAGACCCTAAAAT
CCGTAGCTATGTCCAGTATAAACCAGACAATACCATAAGTCCATTCCAGACTTTAAACCTGAAC
AAATCATGGACCTGGGCTACATCTCTACAGTTTGTTAGCTGTGCAATATCTCTTTAACATCATA
ATTTTGCACCTTTTCCCTATACTTTCATCTAATTTTACCTTGTGAATACGTCATTTTTGTCTTA
AAACATTCAAGGTTCAATATGGGAATTTTGAGGAACAACAGTAGTTAATCGCAATAGTAAAAAC
AATATGTAAGACTCTTGACATTATTAAACTTCAATAGTATTCATCGAGTACATAATTATGGGTT
ATTCGATTGTGTTCAGTTGTTCACTTGTCAAGTACTACCTCCGTTTTTTAATAGATGACGCCGT
TGACTTTTTCTCACATGTTTGGCCATTCGTCTTATTCAAAATTTTTTTGCAAATGTATAAGATA
TAAATCACACTTAAAGTATTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTACGT
AAATTTTTTGAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAA
AAACGGAGGGAGTACTTGTCCAAATCCATCCAGGCAATGGTAAACTCCATTTCACAAACAAAGG
TTCTCAAAACACAACTTGGCGTAACCAAATAAACATATTTTAACACACTCCAGCCAGGCATATT
TTTAATAAGAAAATCATTATAAAACTTCGAGCAATTCTTTGTTTTTTTCTCAATGGATATGGAG
TTTCCTACCAAAATGACAACATATTTAAAAGGTTTGACTCTTTTTTTCTCTTACTGAAGGGCAG
CTGCTACTGTTGTCAATACTTGTATTCAAATAACATCTACCAATATGGCTATGCCTTTTTACCA
CGAGAGAGCTTTTGTATTTGCAATACATAAATGCATGCACAATACCTGCCATGGAGTTTCTCCA
TCTGTATCATCACCATCTACATCCTTGATACTCAGTCCATTGTTGTATACTTCATCAAATGTGA
AAGATTCAATTCCTGGGCCTCCTGTAAAAGGAGACTGTTCGGAGGGAACAGGAGCTTGGTAAAG
AGGAATTTGATGGGTCCCTTTGTCAGGTTTCATTGCTTCAATCCATAATGATAGATCAAACTGA
CTATTAGGGCCATTAAATGCAGTCCCAAGGTCTGACTCGTTAAGAACCACGGGTAAGTTATCTT
GACCATGAGAATAGAAGCCTGTATTAGGTGCTGTAGCCTGTAATCCTTGATAACTGCCTGAACA
TTTTTTAAAAAATATAAATTTATAAAATCTTACATGTATATTCAACTTAGGTTCATAATGAGAA
GATTATACTTAATGCCACTTGCCTACAGATGACGCAGGAACATAAGAGCTGAATATAGAATCAT
CAATCACAGATCCACCTCCATTTTCATGCTGCCGCATCCGAGAGAAAGAGTTGTATCTGGCTCC
TCCCGAATAAATATCTGCTGCACCGAATTTTGCTTTAGATATGCTGTGTATAGTTGGAATATGT
ATCAGTGAAACTATTTTAATGGACTTTATGCAGAACAGAAGGAGGTGGCTAAACAGCTCTACCT
GATTCTGTTTCATCATATTCAGAGGCCTGTCCGCTAACTGAGCTTTCTCCTTCGGTAGTTTGTG
AAGGCAATTGACTTAAAGGGCTATCCGCATGAGATGCTTGCAGTACATCATCATGTCCCGTACT
ACGAGAGCTTAATTTTCCAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.287849463
Functional Information
Coding potential Y
Potential coding position 4730917-4728833(-)
Potential amino acid sequence MRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDLGTAFNG
PNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSIKDVDGD
DTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKNDSFTRWM
SKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAGSK
TRAGKLSSRSTGHDDVLQASHADSPLSQLPSQTTEGESSVSGQASEYDETESDIYSGGARYNSF
SRMRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDLGTAF
NGPNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSIKDVD
GDDTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKNDSFTR
WMSKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAG
SKTRAGKLSSRSTGHDDVLQASHADSPLSQLPSQTTEGESSVSGQASEYDETESDIYSGGARYN
SFSRMRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDLGT
AFNGPNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSIKD
VDGDDTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKNDSF
TRWMSKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTY
AGSKTRAGKLSSRSTGHDDVLQASHADSPLSQLPSQTTEGESSVSGQASEYDETESDIYSGGAR
YNSFSRMRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDL
GTAFNGPNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSI
KDVDGDDTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKND
SFTRWMSKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTW
TYAGSKTR(-)
Sponge-miRNAs osa-miR5789
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017