Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0191000_circ_g.1 |
ID in PlantcircBase | osa_circ_018303 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 4728831-4731219 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0191000 |
Parent gene annotation |
Similar to CG-1 protein (Fragment). (Os03t0191000-01) |
Parent gene strand | - |
Alternative splicing | Os03g0191000_circ_g.2 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os03t0191000-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.287849463 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4730917-4728833(-) |
Potential amino acid sequence |
MRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDLGTAFNG PNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSIKDVDGD DTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKNDSFTRWM SKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAGSK TRAGKLSSRSTGHDDVLQASHADSPLSQLPSQTTEGESSVSGQASEYDETESDIYSGGARYNSF SRMRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDLGTAF NGPNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSIKDVD GDDTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKNDSFTR WMSKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAG SKTRAGKLSSRSTGHDDVLQASHADSPLSQLPSQTTEGESSVSGQASEYDETESDIYSGGARYN SFSRMRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDLGT AFNGPNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSIKD VDGDDTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKNDSF TRWMSKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTY AGSKTRAGKLSSRSTGHDDVLQASHADSPLSQLPSQTTEGESSVSGQASEYDETESDIYSGGAR YNSFSRMRQHENGGGSVIDDSIFSSYVPASSVGNYQGLQATAPNTGFYSHGQDNLPVVLNESDL GTAFNGPNSQFDLSLWIEAMKPDKGTHQIPLYQAPVPSEQSPFTGGPGIESFTFDEVYNNGLSI KDVDGDDTDGETPWQIPNASGTFATADSFQQNDKTLEEAINYPLLKTQSSSLSDIIKDSFKKND SFTRWMSKELAEVDDSQITSSSGVYWNSEEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTW TYAGSKTR(-) |
Sponge-miRNAs | osa-miR5789 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |