Detail information of BGIOSGA016860_circ_g.3


General Information
CircRNA Name BGIOSGA016860_circ_g.3
ID in PlantcircBase osi_circ_014607
Alias Chr04:27784817_27785003(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25991014-25991200  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016860
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016860_circ_g.1 BGIOSGA016860_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA016860-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGATGATTATTCACCCCGGGGGTCAGCCTATTCAGACCTAGGTCCTCGTAGTGCTCCCCGTCT
TTCTGATAGGCGAGCATATATTGATGATGgaatatggaaggcgtgatgaacttcctccgccaag
aagcagagctacctttggtgactatagttcaagagttccagtggatagacgcccctata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATATGGAAGGCGTGATGAACTTCCTCCGCCAAGAAGCAGAGCTACCTTTGGTGACTATAGTT
CAAGAGTTCCAGTGGATAGACGCCCCTATAGGGATGATTATTCACCCCGGGGGTCAGCCTATTC
AGACCTAGGTCCTCGTAGTGCTCCCCGTCTTTCTGATAGGCGAGCATATATTGATGATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021