Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035512_circ_g.6 |
ID in PlantcircBase | zma_circ_008908 |
Alias | zma_circ_0002459, GRMZM2G416701_C3 |
Organism | Zea mays |
Position | chr6: 30484035-30484945 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d035512 |
Parent gene annotation |
Putative AP2/EREBP transcription factor superfamily protein |
Parent gene strand | + |
Alternative splicing | Zm00001d035512_circ_g.2 Zm00001d035512_circ_g.3 Zm00001d035512_circ_g.4 Zm00001d035512_circ_g.5 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d035512_T002:3 Zm00001d035512_T003:3 Zm00001d035512_T004:3 Zm00001d035512_T001:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.117747064 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
30484831-30484067(+) 30484905-30484934(-) 30484332-30484906(-) |
Potential amino acid sequence |
MLRLSCRRRAALTGRSSLISWLPSIYRLGLTPSSSHTMRAYDKAAIKCNGREAVTNFEPSTYDG ELLLTAEASAEVADDVDLNLSISQPASSQSPKRDKNCLGPQLHHHHGRPFDGSAVLKKTKIDAP SELSSAGRPHRSFLPHLVAAEHLPPRSHPFFITHHEGVRQGRDQMQR*(+) MLGSHEMREERPVRAARRRQLRRSIDLGFLQNGGAVKRPPMVVVELRTKAVLVSFGALGRCRLR DAQVQINVVSNFCASFSSQQQLPVVRAGLEVRHGLSTVAFDRGLVVRPHGV*(-) MLKFRSTSSATSALASAVSSSSPSYVLGSKFVTASLPLHLIAALSYALMVCDEEGVRPRR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |