Detail information of Zm00001d053275_circ_g.1


General Information
CircRNA Name Zm00001d053275_circ_g.1
ID in PlantcircBase zma_circ_001817
Alias circ2304
Organism Zea mays
Position chr4: 223800275-223800983  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d053275
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Zm00001d053275_circ_g.2
Support reads 6
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d053275_T001:2
Zm00001d053275_T002:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACGCACTACACAACACTATGGCTGCAGGCTGCATGGAGAGGTACCTCATCTTCCATAGATTT
AATATTGCCAGCAGAATATGATTTGCTTTGGGAGTTccttttttacctccaagctcaaagcttc
cacccttttctcagtatcatgtgctaatgattcaacggtgtaagaattgctgtttatcttaatg
atctcgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTTTACCTCCAAGCTCAAAGCTTCCACCCTTTTCTCAGTATCATGTGCTAATGATTCAAC
GGTGTAAGAATTGCTGTTTATCTTAATGATCTCGTGCTGAAGTTGCCGCACCTATACAGCATTC
AAATCATGAATTTGATTGAGTATTGCCTTTTATATTTCATATAGTAGTACAAAGCATAGAGTTT
GGGTCTCCTGTCTAGCGAACCTCAACTTGCTCGGGAGTCAGGACTAAAAACAAATATAAGTAAC
TTTCATGCCCAGATGACCAGTGGAATATATATAAAAATATGTATTCATAGTACTTTTATCTTTT
AAATATGTTAGATGATTTGGTTCAGTCTGTAAGAAAAGTTATACTATAATGTAAACATGTTTTC
CATTAAAGAAGAGTCGGGGATAGGGCATGAGCTACCTTGGATACAATTATCATATATAGAGAGA
GAGACAGAAAGAGTGATAGTTTTGTGCACATGGTCTGGGAAAAGAGAGGAATATATATATAAAG
AAAGGCAAGTAAGGTTTAGTCACTTAGACTCAGGGATCATGTGCATCCATGGACAACTGAAAAC
GACAAGGTTATGTTTCAGCTTTAGCAAAGGCAATCACGCACTACACAACACTATGGCTGCAGGC
TGCATGGAGAGGTACCTCATCTTCCATAGATTTAATATTGCCAGCAGAATATGATTTGCTTTGG
GAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.13989115
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b