Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G21080_circ_g.3 |
ID in PlantcircBase | ath_circ_003706 |
Alias | Ath_circ_FC0462 |
Organism | Arabidpsis thaliana |
Position | chr1: 7379582-7380536 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT1G21080 |
Parent gene annotation |
DNAJ heat shock N-terminal domain-containing protein |
Parent gene strand | - |
Alternative splicing | AT1G21080_circ_g.1 AT1G21080_circ_g.2 AT1G21080_circ_g.4 |
Support reads | 4 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G21080.3:4 AT1G21080.2:4 AT1G21080.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.224413379 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7380474-7379584(-) |
Potential amino acid sequence |
MTNKDEFTSNAEAEVTRLSNAAYGVEMLNTIGYIYVRQAAKELGKKAIYLGVPFVAEWFRTKGH FIKSQVTAATGAYALFQLQEEMKRQLSAEGNYTEKELEEYMKTHKKVMIDSLWKLNVADIESTI SRVCEQVLQDPTAKREELRARAKGLKTLGKIFQAVQKEREDKLAQILKDRLNLYMTNKDEFTSN AEAEVTRLSNAAYGVEMLNTIGYIYVRQAAKELGKKAIYLGVPFVAEWFRTKGHFIKSQVTAAT GAYALFQLQEEMKRQLSAEGNYTEKELEEYMKTHKKVMIDSLWKLNVADIESTISRVCEQVLQD PTAKREELRARAKGLKTLGKIFQAVQKEREDKLAQILKDRLNLYMTNKDEFTSNAEAEVTRLSN AAYGVEMLNTIGYIYVRQAAKELGKKAIYLGVPFVAEWFRTKGHFIKSQVTAATGAYALFQLQE EMKRQLSAEGNYTEKELEEYMKTHKKVMIDSLWKLNVADIESTISRVCEQVLQDPTAKREELRA RAKGLKTLGKIFQAVQKEREDKLAQILKDRLNLYMTNKDEFTSNAEAEVTRLSNAAYGVEMLNT IGYIYVRQAAKELGKKAIYLGVPFVAEWFRTKGHFIKSQVTAATGAYALFQLQEEMKRQLSAEG NYTEKELEEYMKTHKKVMIDSLWKLNVADIESTISRVCEQVLQDPTAKREELRARAKGLKTLGK IFQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |