Detail information of Zm00001d030316_circ_g.1


General Information
CircRNA Name Zm00001d030316_circ_g.1
ID in PlantcircBase zma_circ_003447
Alias cold_test_circ_007312
Organism Zea mays
Position chr1: 122019256-122019401  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d030316
Parent gene annotation Proline-rich protein 2
Parent gene strand +
Alternative splicing Zm00001d030316_circ_g.2 Zm00001d030316_circ_g.3 Zm00001d030316_circ_g.4 Zm00001d030316_circ_g.5 Zm00001d030316_circ_g.6 Zm00001d030316_circ_g.7 Zm00001d030316_circ_g.8 Zm00001d030316_circ_g.9 Zm00001d030316_circ_g.10 Zm00001d030316_circ_g.11 Zm00001d030316_circ_g.12 Zm00001d030316_circ_g.13 Zm00001d030316_circ_g.14 Zm00001d030316_circ_g.15 Zm00001d030316_circ_g.16 Zm00001d030316_circ_g.17 Zm00001d030316_circ_g.18 Zm00001d030316_circ_g.19 Zm00001d030316_circ_g.20 Zm00001d030316_circ_g.21 Zm00001d030316_circ_g.22 Zm00001d030316_circ_g.23
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   GT-AA
Number of exons covered Zm00001d030316_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCACTTAGCACGGACCTCCACGGCGCTGACTGCGTTGCACAGCTCCACAGCGCTGCGGGGAACC
CGTGCCCCGgtgcaagaacagcaaaggcgagtacgagagcaaggccatgggcaagcttgatggc
ttcggcgccttcagcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCAAGAACAGCAAAGGCGAGTACGAGAGCAAGGCCATGGGCAAGCTTGATGGCTTCGGCGCC
TTCAGCATCCCACTTAGCACGGACCTCCACGGCGCTGACTGCGTTGCACAGCTCCACAGCGCTG
CGGGGAACCCGTGCCCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.46917637
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018