Detail information of BGIOSGA034723_circ_g.1


General Information
CircRNA Name BGIOSGA034723_circ_g.1
ID in PlantcircBase osi_circ_008975
Alias Chr11:1423584_1425276(MH63RS2), Chr11:1423584_1425276(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 1112063-1113755  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA034723
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA034723-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCGCGTTCATCCTCGAGTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTT
GGCACATGTTTTACAAGGTCGCCGATACCCGAGAGAgctctcaaggaggcaatgatgctgtcaa
atccaaccaattgccgaccacacatgtgggcttgcaatattcacgaagaacaattcatgatgca
gatattct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTCTCAAGGAGGCAATGATGCTGTCAAATCCAACCAATTGCCGACCACACATGTGGGCTTGCA
ATATTCACGAAGAACAATTCATGATGCAGATATTCTCGCTCAAGTTATCCAATATCACTGCTAC
TGTTGATGGCCCAGTTCACTTGTATGGATACTTTGCAGTACGGGATCATTTGGACCCGCTACGC
AACTACATCTTCAACCGCACCAGAGATGATCCTTTCATCATGGGGCAAGACAATGGTGTTGATT
CAGATAATTCCTTGATACCAATGCCTGGCCCCAAGAGAGGCATTGGAAACCAAGCTCGTGTGCT
CATTGAGTTTGACATGAAGATCAAGAATGGAGAGACACGAGATGATGATTTTCAGCTCATAGAT
GGTGCTATCATCTGCAGCGAATTCGTGCTTCCCAATAGAGTGTTTACGCAACGGATTGAGGGTG
ATTGTGGTGCGGTGGACATAAGTCTTGCACTTCTCCACAGTGCGGTGGAGGCCACAGTACAAGT
TAGCATATCACAAGTGCATGGCAATGGCTTCAGCTTATCTTTATATTCTTATACCAGTAGAATC
CCTGAAAAAATTCAGCTCTTCGATGGATTCATTTCCAAGCCATGTGATCTGAATAGGTTTGTAG
TTGCTGTGGTGGTGAATACTCCCTTGATTTTAATCTTCAAGATTGACAAGAGAGATGGCTCAGA
TCATGTTCCTGGATGTTGTGCGTTCAAAGCTAGAACACATGGATATGAGTATGACATGCAAGAG
CTCAAACTTGGTTGCACCAATATACTGGTGAAGCTGTCTTGGTCAACTTTGGAGTGATTTTGAA
CAGCCCAAGGGATACATAGTCTATGCTAAGCAGAAAATAACGATGCTTCTGTGTATTGTCTTGT
TGGCAAATGTTTGGTCCTATGTTCAGCACATATTTAAGCTTATTTATTTGTTGTGTAAGTTTAG
CAGTCAAAGAACGTCACTGTGTTATTTGTAAGAAAGCAAGTTTCTATTCTTGTATGTTCATACA
AATTAGATATGGTGCTACACAAATATGCAATTCTTCGTGGGAAACAATAAGAAAATCGTATTTG
TGTGTTTAACTTAAAACAATAAACTATTACCTTGCATCAACACAAAAATACATATACAGACTAC
AGAAAGAGAGAAGACAAGAAAAGGGAGCGGGGGCCGGAGGTTAGGGAAGAAACTTCATCTTTTA
TGGGTCTAGATGGGCCTCAACGGAAAATGGAAGTACGGCCCATTTCCAGGCCCAGAAAGCAGCC
CATATCCTATTCTCTCTATTTTCTACTGCTATTTGAGAGGATAATAGTTTTTTCAAAGCTACTA
CTAATATGAATCGGTTTCGGATTTGTTGCCGCAAAAATCAAAATAAAACCCAAGGGTGGAGGAC
GGAGAAGATGAAGCTAACGAGAGAGATCGAAGGGAGAGAGGCTGAGGCCGGGTTGAATCGCGAG
GGGATTTCATGGCGAAGCGGCGGCAGAGTCCGAGCTTGAGCTGGTGGAGGCGGAAGCGGAAGCG
GAGGCGGAGGCGGAGAAGAATGGGAGGCGAGCAGCAGGTAGCCAGGACGGGGTGAATCGCGCGT
TCATCCTCGAGTGCAGCAAACATAGCGATGGATCGATCTACAGCGGCGACGATTTTTGGCACAT
GTTTTACAAGGTCGCCGATACCCGAGAGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021