Detail information of Solyc04g045600.2_circ_ig.1


General Information
CircRNA Name Solyc04g045600.2_circ_ig.1
ID in PlantcircBase sly_circ_001381
Alias NA
Organism Solanum lycopersicum
Position chr4: 34385960-34390798  JBrowse»
Reference genome SL2.50.38
Type   ig-circRNA
Identification method Segemehl, CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc04g045600.2_circ_ig.2
Support reads NA
Tissues fruit
Exon boundary   No-No
Splicing signals   GA-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTCCACCTGTGCCTGCACCTGAAAAAATAGAGTTGTATAGGATAAGTACACACTTTTATTAAG
TACGGGTATATGCATGCACAAACCAAGGACATGCATcatatgaggcacataggtgacttagtca
tcgaacgtgttggtcgtccctgaatgttttacttccaattcacctaaactcttatacacttccc
caatacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATATGAGGCACATAGGTGACTTAGTCATCGAACGTGTTGGTCGTCCCTGAATGTTTTACTTCC
AATTCACCTAAACTCTTATACACTTCCCCAATACCACATTATACACAAATTTAGGACATTAGAC
CATCATTAAAACCATGATAGGCTTTGTCTTAACCTAAGTCATTTGAAGGGTGTTATAATCTCCC
CCACTTGGATAACATTCATCTTCAAATGACACTTTTCCACTCTCCGGACATTCCCAATAATGGA
GATTCATTTAGAAGATCATGACCATAACCATATAACACCTTATCAATGAGAAACATCAATTTCA
CATCATTATGAGAATCACAACACAACAAGAAACTAGAATAAATTCTGAAATTCATCATGAAATA
AAACTCACATCCTTTATTCCAAATAGCAAAAATTATTTTATATTCCATATCATGATCATATACA
TCAGTTCTAGCTACATTGAAACAATCTTTTACCAAAGAATGAATTAGTCAATTTCCCAAAAATT
TTACAGTGAACAGAAATCCCTGGCAGCCTTTAATAGTTATTTTTTCAACATTTTTGAAAAATGC
AACTTTTAGACAATTCATGATGTAAATATGCAATGTAGAACCACATAAACACATCTTACAACAT
AATTATAACTTCATAAAATTCACAATGCAAATAATCAACGATATTCAATTTCAACAAGACCCCT
AAACACAATGCACACGCAACATACTTCTTTGACTTTCTACTCTCCAACTTGAGTTGAATAGAAG
AGATGAGACAATCAATCAAAACTCCTTTACTCACCATACTCCCCTACTTAGAAGGAACTCATAC
TCTAAAGAGACACAAGGACATACCATCATTCATTATCATCATCATCCAGGTTTTCTCCTCTAGT
CTGGAGTGCATATAAACGCCTCTTATTTTTAGCATCATCCTTTGGAACATTAGGAACAAATTGC
TTAACCTCTCTATTAGTCAATTTCTGGGGAACCACCGGAATATCATTACCTCCTCCACAATAGG
GAGTTGAGCACCTTGAGAAACTTGCTGAACTTGAGGAGGAATATCCTAATTCACACGTTCTCCT
CAACCCTCGAAGTGGGTGTTCTCCTCGTATTCATCTTCCTAAAAACACAGGGAAAGCCATAAGA
AAAGACTAGTCATAACATTTACTCTATGGAACGACAAAGGAGTAGAAAACAAGGAAATATTTAT
CGTCCTATAGCCTCTCGCCCATAGATGTGTCGCGTCTCACACAAGTGGTTAAGACTCTACTAGC
CGTTACTTATTGAGAATTTTTGATTCCTAAGACCACTTTCATAAGCTATGTTATAATACCAAGC
TTGTCACATACTCAGACCATACCATAAAAGATATGGCACTCTCAGAGTGCAACCGCCGTACTTG
ACCTCTCGGAGGTCTTGTCTAAACCCTTTTGTATCGTTCATTGCATATAAACATATGAAAAGTG
GTGTGGAATTAAAACTTTTCATAAACATGATATACGTATTAAAAAAACTCTCTCATATAAAACT
CATAGGAAATACTAAGTCTTATTTAATCAAATCTTAGACACAAGAATACTTTCGGACACAGCCC
AGATTTAATAGAAATAAGTACTACTAAATCTATTAAAATACTTTGATAAAGGAAATAAAAGACG
TCTATGCCCTCGAGTCAAATGAACAAATACTTTAACTTCTGATGAATTATGCTATGATCAAAGT
CTTGATTCCCAAATGCTCGTCACCTACAACCACTATAGGGATAGATAAAAGCATGGAATTAGCA
CAAACACATGTACTACATATGACATAATGCATAAAATCATGAAAACAGACATTTATTAGAAATA
TTCCTCTTTTCTTTTGAGTATCATAATATAATCATAAGAATAGCATTTAACAACTAAGAAACAT
ATAAGAAATTACTTACACCATTTAGCACATTTTTACGACACATTACAGCAAACTACTGCACTGT
ACAATGAACTTCTTCATTGTTATAGTGAAGTTTCTTAACTTCACTTTAGACATCTTCTATCATG
TAATTCCCTCACTAAAATCCATCATAATACTCACTTAAGTAAGACAAAGAGAGACCACCAAAAC
AACCTCTCTAGGCATACCTAAATGATCATTAAGACCACTTATAATGAGATCAACACACACTTAT
AAGCCACCAAAGATATGAAAATGAGATTCTTCTACCAAAGGTGATTCTAAGTCTCACTTAAGTG
AGTTGTGAAGCGACCGCCCATACAATCTCTTACACATACGCTTAAGAGATACTATAGACTACAT
TTGATAGAATCATTCTCACTTAATACATCAATACATAGATAATATGACATTCTCCTTCCAAAGG
CTATCAAAAGACTTACTTAAGTAAATCAAGAAGATAAAGTCCATGATTGACCTCTTCAATATTA
CCTAAATAATCCTTAAAACTACCTAAGGCTTAGATAATGTCCACATAATCAACCATCTTCCCTA
ACTAGAGTCATTCTTAAGACTTATCTAGGTAAGAAACGAAATGACCATTCCTATGCCCCCTTCA
CACCTTAACTGGACAACCCTTAACTACTCTAGATAAGTACTTATTCATTTATCTTTCTATCTTA
ACTTAAGTCATTACATTCCTTTGTTCATTTAAGACACTTTCATCACATAAGGACATTCAAGTAA
TAGTCTTGGACAATACCTAGGGACTCTAACTAATACCTTTAAAGCCTATTGTGCAATATCTAGA
TAGTGTCCCATACCACAACCTAAACTTCACAGAACTTCTCTAAAACTAGTAGGTATCCCACGTG
ATGAGAATAGGCAATAACGGACATAGACCTGATAGCTAGATATGGAATCCAAAATACTAACATA
CTTCGATGAGGGTGTTTTACTTGCCAAGGTTAGAACTAGGACACATCCCATGTAGGCACATGGT
TAAGGAGTATGAAGGGATTTGATTCACTCTACTCTCAATCTCAAGTAGAGATACATTATACTCT
AGTCTCTGTCTTAAGTAGAGCTACTTCAAATAATATAATCACTCGGTGCTAGCCTTTTTTCTCA
TCGAGTAATTGACATTAAAGGTTCATACAAAGCGGTTCCACAACTAGTTTCATAACCCAATAAC
ATTTACACTACCAAAGAGGTCTAGTAGGGCTACCTTATAATGACGACATAGATCGATCATTATG
ACTTTCCTAAAGATGATATGATGTTGTTCAAGACAATCAACCTTAAGTCCGCCATTCCTTTACA
TGAAGGATACCATTATGGCTCTCCACTTCAACATTCATAACCTTACCACTAGGTTCAAGGTTCC
ACGTACATGACCTTCTTAACATCACTAAGCCTACCTATTGAAGACACTTCGTATTCACATATCA
TCCATACATGTATCAAGTAAGGGACACAAGTCTACCAAATCAAGACACAACACTATTTACTTTA
TCATATATAGCATATCATTCTTTGAATCACTTTGAATGACCCTTATCATACTTATGTCATCCCT
ACATTTTCATATCATCATCAATATAACAATCACAACTCATATAGTAAAGTAGGAACAATCTACG
CATCAACACCTAAGACTACACACGTAAGCACATAGTCATAGTCTAACACGATCTCCTAATATAC
ATAAAAAGAACACACACTTCACATTAATTCACATGTAGATAGATATGATCATACTTCACGTAAA
TCGAATACACAATTCATCTTCATACTTCATGTATTTCTGACAAGGCCAAGATCATCATATTAAA
TAAAGTAACACTGACAAGGCCACATCAATTGCAACTATAACACATAACACCACTACCATAAGTG
TACCATACCAATCACAACATAATTGAAGTCTAATTAACATAAAATAAAGATAATTAGTACAATG
TACCACCACTCCATTCTCCCCACCTCAATCCCTTGCTAAATCATCCAATTCAATACCATAAGGA
CCTTACCCATGGCCATAACCCATAATTTAATTGATAAACTATGAATTCAATCAAACTAGGTCAA
TTTAGTATAGGTTCATCAATATAAGATAACCATATATGAATTCAATATAATTATCACATCATTC
AATAGTCCATAGAAAAATACACTAGAATTCATAAGCATTAGAAAAATATCACTTAACCCATAAG
TAGTCAAAAACTAGGGTTCATAGGTCAATTGACTTAAAGTCATCTAATCAACAACAATTCAATC
AATATTCAATGCTTTAAAACCATTAATGCATGAACAAATGGATAGATCATAAAATTAGATAATT
CATCTTTGAAAACTTTAGATAATTTCTTTCGAAGTTGGGATTCTTGATTAATAGATTTTCTATC
ACAACCGGAATCTAGACCCAAGACGAGACCGGCGTCATTGACCTCTCTAAGGTCGTAATCCTTC
ACACGTCATTCTTACTTCATCTAGGTTAATTTTTGTTTTCTTATTTCATGCTAAACATTTTAAA
CTTAACATCGTAGGCGTTCACAAATTAACCATCTAATATAGAGATAATCAAATAAAATAAACGG
TTCATAATTTCATTAAACATATTCTTTCAAAAAGGAACCAATGCAAAATCTGAAATTAAAATGG
AAAGAGACACTAGTGGAACATTCTCTACTAGATAAATCCTACATAGAAGCTAGATAATAACGAT
AGACATCCTCGAAAGCATGAGGGCCTACCATGTCCGGATAGCTGCAATGTCAACCTGTAAGCTC
TAGCGTCCACCTGTGCCTGCACCTGAAAAAATAGAGTTGTATAGGATAAGTACACACTTTTATT
AAGTACGGGTATATGCATGCACAAACCAAGGACATGCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.090794808
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017