Detail information of BGIOSGA003230_circ_g.1


General Information
CircRNA Name BGIOSGA003230_circ_g.1
ID in PlantcircBase osi_circ_008903
Alias Chr01:9463978_9468171(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10216808-10221001  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA003230
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA003230-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTGTTGTCGAGGGGGTGATAGCTGCTGCCAAGATTCATCCAAATCATCCAAGAGTTTACAGAG
ACGAGACAATCGACCCAAGGAGCCTTACTACAGCATgacaagaacgtggatgaaacaagtcagg
gaggtagcatttgatgctgaggattgtattgacacattctggtgctacattggccatcattatg
gtgccagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACAAGAACGTGGATGAAACAAGTCAGGGAGGTAGCATTTGATGCTGAGGATTGTATTGACACA
TTCTGGTGCTACATTGGCCATCATTATGGTGCCAGGGGAGTCCGCTGTTATTGTGTACCAAAGG
TAGTCTACACCTTGAAGACGTTGAAAGTGAGGAACAACCTGGCCATCAAAATCCAAAGTCTCAG
GACTCGTGTGCAGAGAGTGAGTGAGCGGAGGCTGAGATACATGCTCAACCCAACAGGATCTACT
TCTAAATCAACCAATGGATCTCTGTCTTCTTCAAACTACATTGATCAAGAGCGCCGATTATCTG
CACTAAACATCGACGAATCACGACTTGTTGGAATGGCTGATAAGACAGAAGAAGTCACCAAGCT
GCTAGACGAAGGTCATGTGCCTAATCTTAAAGTAGTCTCCGTTGTTGGCTTTGGTGGACTAGGA
AAAACCACCCTTGCAATGACTGTTTACAAGAGCCCAGCAGTGAAAGGGATCCAGAGCCGTGCTT
TTGTGGCAGTGTCCCAAAACTATGATCCCCGAGCACTTCTGGAATCTTTACTGAAGCAGCTTAT
CCAAAGACCCTTTCTCAGAGAGCCAAGGAGTGTGGATGAAGAAACTAGTACTGAAGACCCCCTC
AAAGGCATCGAAACCTGGGACATATGCCAACTCATTAATAGGTGCAGAAATTACTTGGAGAACA
AAAGGTAATACTACTTCCTTGAATTTTCAGTGTCATAACCTTTAATAAGTTTACTTGGCTTGCA
GTACCAATGACACACTGGAATTTTTTAAAAATTGACTTTCACTAACAATGCAACAAGCAGTTTT
CTAGCATAGAAGTCATTGTATCTTGAAATACATGTGTAACGGGGATTATAAAATTAAAATAACT
CCAGAACCCAACATGTAACAAAAAAGCTAAAGTTTTATCACCTAAAACAACATACCTAAAAGAG
TGGAAAACTAGAACAACCCAAATAATTTAGGCCACTTGAATGTTTCAATGGTAAATCTAGAAAT
TTCTGCTTGAGAGGTCAACTTTTAATCACTTTATCAACATAATAGCTCCTACAAAATCCCGATA
ATTAGTAAGCATTTTTAGAAAAGAAGATGAAAAGACCGTGGGTCCATTCGACCAGCACATATAT
AATGGGTATACACTGAATATGTTTGTTCAGAGATATACACATTCTCACAGTAGTAAAAAAAGGG
AAACAATACACCTATTTTTTAACTTAGATCAAGACTAAACTTATGCGATAAATTCTAATTATAT
GATAAAGGGAATAATTCATTTTTTATTTAAACAAATAATATCTCACAATTTCTTTTGGTTTAAT
ATGATGCATGATGTGTTGTCGTATTATTTTTAATGATTATCTCATTAGGGGCATGTATAATACC
ATATGATGGACATTAGAACCACAATTTAGCTGTACAATCAGCAGTAAAATCTCTGAATTCAGTG
TTTAAGTAATTCTAATGAAATATAACACTATAATAAAATCAGAAATTTACATAAAAAAAGGAAA
GGTAGAAAAGCTACTGTTTGTGTTTTTCCTCTTTTTGTTTGTCTGGCATGCGATGAGTTGTATT
CAATTTTTATATATGTTAATAGATCTGTAAGAACCCCAATCTCTTCACAAGTACTCCCTCCATC
TACTTTTGATAGTCATATTTCCAAATCTGAAAAATTTATTTTTTGATAGGCATATTTCAATTCA
ACAACCTATCATCTTAATGACTTTCTCGGATTTAATGCATGACTCTCCATTCTTCCACACAAGA
TTGGCTACTTGAGCATCGAGAAATGTAAATATTAATGAATCGTTTGTTTACGATGAATGACTAG
TAGCATGTTTAAATGGATGATAAGTAGAATTATTTATCCTTGGTCTGTGTGTCAAGATGAAATA
TGACTATCAAAAGTAGATGGATGGAGTATTAATTTGGCACCTGTTATGGGTATACGTGTCAAGT
ATATCTGTAGTAGTGTGTGTCAAGAGTATGAGTCCTTTCCTTCTCATGTACACTATGCATATGC
CCTTTGGCCTAACTCAACACATACAGTTCATTCCCTATTTCTCACTTTTCTCAAATTTGGTTCA
TCTTTATATATATATATTTTGCTTGTAGATTGATAGATAATTTTGCTCCTCATCAGAACTTTGC
TTTTAGTTGAAAGATTATTTACTTTCATCTCTCATATATGTTTAGGTACTTCATTGTTCTTCAT
GACCTTTGGAGGCCAGAAGCATGGATGACTTTGAAGATAGCCTTTCCTGATAATGATAAACGGA
GTAGAATACTAATTACTACAAGGAATCACCTTGTAGCTCAAATTTGCTGCTATTATCCCCATGA
CTGTATTTACAGCATGGAGCCCTTACCCAGTGAAGAATCCAGACATTTATTCTTCAAGAGAGTG
TTCAAATTGGACAAATGTCCTTCACAGTACCAAGATTTGGTGGATATCTCCGATGCCATATTAA
GAAAATGTAATGGCTTGCCTCTAGCCATTGTGAGCATAGGAGGAATGCTAGCTCGAATGAAAAA
CAAGACATATGCAGAATGGCAGAAGGTGTGTGACAGATTGGACTGTGGGTTAGAGATAAATAAT
ACTGTAGGGGGAATGAGAAAGATACTCTCTCTTGGCTACAATGATTTGCCCTACCATCTGAAGG
CTTGCTTCTTGTATCTTAGTGTTTTTCCCGAGGATTTTGAGATCAAAAGAGGACCCTTGATTAG
AAGATGGGCAGCAGAGGGTTTCATTGGTAGAGTGCGTGGATCAAATTTGGAAGAAATTGCTGAT
AAGTATTTTGATGAATTTATCAGTAGAAACATCGTTACACCTATTCGGATTGATAGCAGCGGCG
AGGTCCGGAGTTGTAGGGTTCATGACATCATGCTGGAAGTAATCAGTGCCATATCTGTCCAAGA
AAACTTCATCTCACTCCTAGGGAATTACAGTTACAGCATAACAGGGCATGACAAAATTCGGCGG
CTTTCCATCCATGTAGGTGGTGGTAAGGAGCAAGATTTCTCATGTAGGAACTTATCCCATCTAC
GTTCTTTGACAATCCTAGGCTGCAAGGAGAAACCAATACCTATCGCTTTGGCTGATCTAACACT
TCTAAGGGTGTTAGACCTTGAAGGTTGCGGCTGGTTAAGTGATTCAGATTTGAAAGATATTTGC
AAGCTGTATCTGTTGAGGTATGTAAGTCTTCGAAGCACAAATATTTCAAAGCTACCAAGGGCAG
TGGGGAACCTGAAAGAACTTTTGACATTGGATGTAAGAAGCACTTACATTAGGGAGTTACCTGC
AACTATCACTCAGCTCCGGTGTCTCAAACATCTTCTTGCAGGCCGTTACAAGTACTATACAAGG
ACACATCATGTGAAACATTTTGCTTCAAAGGAAGCTGTGACTATACCTGCTGGGTTGAAAAATA
TGAGTGCCCTTCAGAGCATTGCTCCTGTAAACATCTCATCAAGCTTCCGTGCAATGCATGAACT
GGGAGAGCTGTCTCAGTTGACCAAGCTTTGTGCTATCAACAGAAAGGGAGTAGAGAAATGGAGA
CCTTTCGCTACCTCATTAAGTAAACTGAGCAATTCCCTTCGCCACCTATCAGTAATTCATATCG
ACAAAATGGAACATGGGCTTGAGTTCTTAATGGACCTAAGCTCGCCGCCTCTCTTCCTGAAAAA
GCTCTACTTTTGGGGAAGAGTGAGTGCTCTGCCTCCATGGATTTCATCTCTCAGCAACTTAGTC
AGGCTATCGCTCCGAGAAAACTATCTGGAGAGTGAATTGGTCAAGATACTAGGGAAACTTCATA
GTCTTTTGTCCCTCAAACTGTATGTTAACTCATATCTAGGGACAGAACTATGCTTTGAGCATAA
TCTTTTTCCGAGACTCAAACAACTTATGATAGATAATTTAAAAAATCTTGATGAGCTTAGCTTT
AAGGGAGGAGCGCCTGATCTTGAGAGACTCACGTTGGCTTTTGTAAAAGCACCCGAAAGAGGCA
TTTCTGGCATAGAGAATCTTCCAAAACTAAAAGAAGTTGAGTTCTTCGGGATTATTGTTGACTC
TGTTGTCGAGGGGGTGATAGCTGCTGCCAAGATTCATCCAAATCATCCAAGAGTTTACAGAGAC
GAGACAATCGACCCAAGGAGCCTTACTACAGCAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021