Detail information of AT1G13030_circ_g.2


General Information
CircRNA Name AT1G13030_circ_g.2
ID in PlantcircBase ath_circ_002337
Alias 1:4445222-4445413
Organism Arabidpsis thaliana
Position chr1: 4445222-4445413  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G13030
Parent gene annotation Coilin
Parent gene strand -
Alternative splicing AT1G13030_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G13030.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAATCCTGAGCATATCGTTTGGAAAACCCTGACTTCTCTGTGCCCCATTTCTGTCCCTTCTTC
TTCGTCATGTTTCCATTCCACAAGACATTTTCctttactgagccagtgtaagccacaagctgtt
cataatcaatcggacaattagcaagtgtctctgcttcagcgggctgtgtcgtagcatcttcatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTACTGAGCCAGTGTAAGCCACAAGCTGTTCATAATCAATCGGACAATTAGCAAGTGTCTCT
GCTTCAGCGGGCTGTGTCGTAGCATCTTCATTAAAATCCTGAGCATATCGTTTGGAAAACCCTG
ACTTCTCTGTGCCCCATTTCTGTCCCTTCTTCTTCGTCATGTTTCCATTCCACAAGACATTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.249975521
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020