Detail information of BGIOSGA016230_circ_g.3


General Information
CircRNA Name BGIOSGA016230_circ_g.3
ID in PlantcircBase osi_circ_014279
Alias Chr04:18016494_18017040(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 15991660-15992206  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA016230
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AG
Number of exons covered BGIOSGA016230-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATCAGCTTCTCTAACCTTACAGGTTGTGGAGTTAGATCCCTTGGTAGAGGAGGTGGCAAAGA
AATATTTTGGCTTTTCAACAGATGAGCAATTGCAGGgatccaagaccgttctgaggattgatca
tagctaccttggtagttcttatcacagcagtatcatatctggcctttctttaattgcatctgct
ctggattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCCAAGACCGTTCTGAGGATTGATCATAGCTACCTTGGTAGTTCTTATCACAGCAGTATCAT
ATCTGGCCTTTCTTTAATTGCATCTGCTCTGGATTCTGCTGCAGTAGCTGGAACAAAAGTAAGT
AGCATGATCTCATTCTACATGAGCAATTCAACTTTCAAGTCTATGAACCTAGAGTGTTAAAGAT
TGTTCTTTTATGAGAAATGAAATTTCTAATTTTAATGCCTGGACGCTTGCAGTGGCCTTTGTTA
TTTTGTTCTTAGCTTACAGCATAAACCATTTCTAATATTTAAACCCTATAATGCATTTTGTAGG
TTAGCACAACCATCATAGGGCTTGGAGCAGGAACTTTACCAATGTTTCTTCGTGGATGTCTCCC
TTTCCTAGATATTAAGGTAAAAGAAAGAAAAATGTCTTATCTTAGTTGACTGGTTGAATGGGGT
GATCAGCTTCTCTAACCTTACAGGTTGTGGAGTTAGATCCCTTGGTAGAGGAGGTGGCAAAGAA
ATATTTTGGCTTTTCAACAGATGAGCAATTGCAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021