Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d047253_circ_g.7 |
ID in PlantcircBase | zma_circ_005938 |
Alias | seedling_test_circ_000328 |
Organism | Zea mays |
Position | chr9: 124181140-124184870 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d047253 |
Parent gene annotation |
sucrose synthase1 |
Parent gene strand | - |
Alternative splicing | Zm00001d047253_circ_g.5 Zm00001d047253_circ_g.6 Zm00001d047253_circ_g.8 |
Support reads | NA |
Tissues | seedling |
Exon boundary | No-Yes |
Splicing signals | GT-GA |
Number of exons covered | Zm00001d047253_T007:7 Zm00001d047253_T008:7 Zm00001d047253_T005:7 Zm00001d047253_T015:7 Zm00001d047253_T013:4 Zm00001d047253_T016:7 Zm00001d047253_T010:7 Zm00001d047253_T001:7 Zm00001d047253_T009:7 Zm00001d047253_T014:7 Zm00001d047253_T003:6 Zm00001d047253_T002:7 Zm00001d047253_T017:3 Zm00001d047253_T019:7 Zm00001d047253_T018:7 Zm00001d047253_T011:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.006416354 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | zma-miR396b-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tang et al., 2018 |