Plant Circular RNA Database

Detail information of AT5G10690_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G10690_circ_g.1
					
						ID in PlantcircBase
						ath_circ_037459
					
						Alias
						5:3374251-3377428
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 3374251-3377428  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G10690						
					
						Parent gene annotation
						
							Pentatricopeptide repeat-containing protein At5g10690
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G10690_circ_g.2 AT5G10690_circ_g.3 						
					
						Support reads
						1/1
					
						Tissues
						seedling
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G10690.2:12
AT5G10690.1:11

General Information
CircRNA Name	AT5G10690_circ_g.1
ID in PlantcircBase	ath_circ_037459
Alias	5:3374251-3377428
Organism	Arabidpsis thaliana
Position	chr5: 3374251-3377428 JBrowse»
Reference genome	TAIR10.38
Type	u-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G10690
Parent gene annotation	Pentatricopeptide repeat-containing protein At5g10690
Parent gene strand	-
Alternative splicing	AT5G10690_circ_g.2 AT5G10690_circ_g.3
Support reads	1/1
Tissues	seedling
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G10690.2:12 AT5G10690.1:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCATCTTCAAGGAGACCAGAAGCTACCCATCCGCCATTGATGGGCTTCAAGCTTCACCTTGAGG
CTTGAGCTAATCGAAATAGATAACGTTGGAGAGAATcagaggaaggaacaaagaaggaaggggt
gcaagggaagaaggaatctccaacagcataggctgcaagagaactcgaagaagaacaaggttag
ggaacaag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CAGAGGAAGGAACAAAGAAGGAAGGGGTGCAAGGGAAGAAGGAATCTCCAACAGCATAGGCTGC
AAGAGAACTCGAAGAAGAACAAGGTTAGGGAACAAGGTTTTGTTTCTTGTTCATTTTCTTTCTG
ACAAAAGTGAATATATTGAAAGAACTAAATCATATAAGAAGCGATAAAATATTACTTACATTCA
CTAAAGCAGCTTTTGTTCTGATTCAAATAGCCGATACAATTGTGCTCTTGTAAAAGCTCCTACT
GCCTTTGAGCTATAACCGCTCCCACTAAAATTCCCGCAGTGAACAACTATAACCATCTTAAGCT
TCTTTTCCAAAACTAGATCTACCACACGACCAATCGATGTTGTTGTACTCACACATGTGGGCGG
GCTTCTCATCATTGAGACCAATGGCGCATCAAGCTACAAGAAAATAATTAAATGCACAAATATA
TCAGTTCATCTATCTTTTTTTGTGTCAACAAGTGCTGAAGCGGAACAATATTTTGTTTTAACTC
ACGTTATTGCAATCCTCCCGATGCAAAAGGCCTATGCAGCTTCCCCTGTCGTCTACAATTGGTA
CAACTTGCTCCTTGAAAAACCGCATGGCCACATTCTTCAACTGCAGAGTGCCTAGCAGTGGCCG
AGTGGCTTCAAATCGAATCATAATGCTTTCTATTGGTTCACTTGGTATCACCTGTGTCAATAGA
TTGCTGTTAATTACCAAACTTACATCTCAGTATTAGATTGAAAAATTGAGGCAAGTACAGCAAA
CCACCAAACCTCACATTCTGAGATCATTTGCCTGAATAGAGAGTGTGGGCAATAGATATCTATA
CCTTACTAAGTAGATGTGGACGCAATATAGACTTGGAAAACCCCAACAATGTTTCTAGGCGGAC
AGCAGCCTGCGGTTGAACAAAAACCACCCAACTAAGGTTTCACCGGACATAACCGCTTAGTAAA
TACATGTTTACCAAAACAAAAATCTCATGTCTGCAAATAACTTTTCACATCATACCATGCCTCC
ACTAGTCGTCCAAGGTATTGTCTTCCACCTTCTCACGATACTTAAAAGAATCCCTAGGGCCTCA
TCGAGCTGAAAAATAATCCATAAAATTAGTTAAGAGGACCCATAATCATTACCAGACTAGTATC
ACCAGAAAATGATAGACACCACATAAAGGATAAAACAAATAGAAGGCCCAAATCCAGAGAGTTT
ATCTAATTCGTTAGTACCTGGCCATCATTGAGAGCTGCTTCCATCAGGAGATTATCAGCTTCTT
GTTGAACCGCCTTGGAGATTGATCCTGAAGAATCCGGCCATAAGCGAAGATACAGATTTCTAAC
CATTCCATAATCCCCTTGGACAGCAAACGCACGCATCATAGACAGGTACAAGTGAGGCTTTGGT
CGCAAGACTTCATTAGCTCCACTTCTCTTCAATATCTCACCAAATACACAAAGGGCCCCTGTGA
ACATATTCAATAAAGACCCTAAGAAGTTACTTCAAGAGCATCTATGTCCGGATGCTGAAAGCAG
CAATAATCAGAAATAAATTCATAGTATCATACCGCTTGTTGAACCACACTTCAGCATGGCATCA
ACTACTGCTGTAAATGCAGTTCGGTCAATGAACACGTTCTCACACAATTTCATTTCCAAAAAAA
TTTCCTGCAGTGATAACAGATCCGTTGCATCCCCAAACCCCTAAGAAGTAGAATTATCATAAGA
GGCAGAAATTGATAACGTTTAAAGCAGAAACTAAAAAGAGTACTAGGCCATCTTCCTACATAAT
GATCAGATATGTAATGAGATATTGCTGGCTCACCTTCACCAAAGTGGTGTAGGTTACAACATCT
GGCTGAAGAAAATCGTCGTAATATTCCTCTGCTTTCTCCTGAATTATATTCAAAACCAAGACAT
TATAATTAATATGAGCCAAGCTCTACCCCAGTACTACTCTGAGTAACACTTGGAGTATAAAACT
GGCCTTTAAAATATACATGTGTGACCTTCATATCATTGAAAAACTTCATAGCCGCATCCAAGTC
GCCACACTTAATGCAGGCATGGATCAAAGTATTGTAGGTCAACCTATCTGGCTCCAATCTAAGG
CGTAACATTTCATCCAGCAAATTTATTGCAGCTTGCGGAGATTCTGAGTTGACATAGCCCTGAA
ATATATAACAAGACATATACCATGATGATGCTTCTCTGACCCTAAATCAAATGCAACTATGTGT
AAAGAATTACCTTCATCAGCAAGTTATAGATAAGAACTGACGGAGTACCATGATCTAGAAGCAA
AATATCATATCGTGCAAGCAGACCATTGGCACGACGTAAATCTCCTGCACTAGATCAATATCAA
GTGTTTTTGCATCAGCTTCAGGCCATTTCACTAACACCAAGATTACATAATCAAGATTAGCTGC
AGCCTGTTGAGCACGAGAAACAGTTACAGCTTAAGAATCTTACCAGCATTGATAAGAGCGTCAA
GCAGACCATAGATAAGAGATGATGACAATTTGGGAGTCCCAGCAGCAGTTCCATACTCTATAGT
CTCCAGCATTTGGAACGCTTCATCAATCCTCCGAGCCTTACCCAATCCCTTAACCAATACAAAC
GATTCGACATCAAATTCAGGTTGACACACGAAATCAAAATTCAAAATTAGAGGAAAGAACCAAA
ATTCAAAATTAGAGGAAAGAACCAAAATCACCTTCAAGATAGTAGCGTAACTAATAGAGTCGAC
TCCAATTCCACCAGGTTCCGCCATCTCATGGAACATCCGAAGAGCCAAATCAATATTTCCACAG
TGAACGCAAGCTTCGAGAACTGAGTTCATCACAATTGTGTTGAGCCTCCCATACCGTTTCTTAG
CGGCTTCTACCTCCTCCACGATCTGACCAAGCTGACGACGGCGCGTGAGGAGAACAATGCGAGA
AGTGAGAGGCTTGAGATTGATTCGCCTGGAATAAGGAGTAGCTCTGCGAGGATAACACCGTCGT
GTCGGAACAAAGGAGCACGACGGAAGAAGAGGGAGAGGAGTGACAAGAGTAGAAATAGCTGAAA
TCCGATTCATCTTCAAGGAGACCAGAAGCTACCCATCCGCCATTGATGGGCTTCAAGCTTCACC
TTGAGGCTTGAGCTAATCGAAATAGATAACGTTGGAGAGAAT
						
					

			
		

Sequences
Splice junction sequence	TCATCTTCAAGGAGACCAGAAGCTACCCATCCGCCATTGATGGGCTTCAAGCTTCACCTTGAGG CTTGAGCTAATCGAAATAGATAACGTTGGAGAGAATcagaggaaggaacaaagaaggaaggggt gcaagggaagaaggaatctccaacagcataggctgcaagagaactcgaagaagaacaaggttag ggaacaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CAGAGGAAGGAACAAAGAAGGAAGGGGTGCAAGGGAAGAAGGAATCTCCAACAGCATAGGCTGC AAGAGAACTCGAAGAAGAACAAGGTTAGGGAACAAGGTTTTGTTTCTTGTTCATTTTCTTTCTG ACAAAAGTGAATATATTGAAAGAACTAAATCATATAAGAAGCGATAAAATATTACTTACATTCA CTAAAGCAGCTTTTGTTCTGATTCAAATAGCCGATACAATTGTGCTCTTGTAAAAGCTCCTACT GCCTTTGAGCTATAACCGCTCCCACTAAAATTCCCGCAGTGAACAACTATAACCATCTTAAGCT TCTTTTCCAAAACTAGATCTACCACACGACCAATCGATGTTGTTGTACTCACACATGTGGGCGG GCTTCTCATCATTGAGACCAATGGCGCATCAAGCTACAAGAAAATAATTAAATGCACAAATATA TCAGTTCATCTATCTTTTTTTGTGTCAACAAGTGCTGAAGCGGAACAATATTTTGTTTTAACTC ACGTTATTGCAATCCTCCCGATGCAAAAGGCCTATGCAGCTTCCCCTGTCGTCTACAATTGGTA CAACTTGCTCCTTGAAAAACCGCATGGCCACATTCTTCAACTGCAGAGTGCCTAGCAGTGGCCG AGTGGCTTCAAATCGAATCATAATGCTTTCTATTGGTTCACTTGGTATCACCTGTGTCAATAGA TTGCTGTTAATTACCAAACTTACATCTCAGTATTAGATTGAAAAATTGAGGCAAGTACAGCAAA CCACCAAACCTCACATTCTGAGATCATTTGCCTGAATAGAGAGTGTGGGCAATAGATATCTATA CCTTACTAAGTAGATGTGGACGCAATATAGACTTGGAAAACCCCAACAATGTTTCTAGGCGGAC AGCAGCCTGCGGTTGAACAAAAACCACCCAACTAAGGTTTCACCGGACATAACCGCTTAGTAAA TACATGTTTACCAAAACAAAAATCTCATGTCTGCAAATAACTTTTCACATCATACCATGCCTCC ACTAGTCGTCCAAGGTATTGTCTTCCACCTTCTCACGATACTTAAAAGAATCCCTAGGGCCTCA TCGAGCTGAAAAATAATCCATAAAATTAGTTAAGAGGACCCATAATCATTACCAGACTAGTATC ACCAGAAAATGATAGACACCACATAAAGGATAAAACAAATAGAAGGCCCAAATCCAGAGAGTTT ATCTAATTCGTTAGTACCTGGCCATCATTGAGAGCTGCTTCCATCAGGAGATTATCAGCTTCTT GTTGAACCGCCTTGGAGATTGATCCTGAAGAATCCGGCCATAAGCGAAGATACAGATTTCTAAC CATTCCATAATCCCCTTGGACAGCAAACGCACGCATCATAGACAGGTACAAGTGAGGCTTTGGT CGCAAGACTTCATTAGCTCCACTTCTCTTCAATATCTCACCAAATACACAAAGGGCCCCTGTGA ACATATTCAATAAAGACCCTAAGAAGTTACTTCAAGAGCATCTATGTCCGGATGCTGAAAGCAG CAATAATCAGAAATAAATTCATAGTATCATACCGCTTGTTGAACCACACTTCAGCATGGCATCA ACTACTGCTGTAAATGCAGTTCGGTCAATGAACACGTTCTCACACAATTTCATTTCCAAAAAAA TTTCCTGCAGTGATAACAGATCCGTTGCATCCCCAAACCCCTAAGAAGTAGAATTATCATAAGA GGCAGAAATTGATAACGTTTAAAGCAGAAACTAAAAAGAGTACTAGGCCATCTTCCTACATAAT GATCAGATATGTAATGAGATATTGCTGGCTCACCTTCACCAAAGTGGTGTAGGTTACAACATCT GGCTGAAGAAAATCGTCGTAATATTCCTCTGCTTTCTCCTGAATTATATTCAAAACCAAGACAT TATAATTAATATGAGCCAAGCTCTACCCCAGTACTACTCTGAGTAACACTTGGAGTATAAAACT GGCCTTTAAAATATACATGTGTGACCTTCATATCATTGAAAAACTTCATAGCCGCATCCAAGTC GCCACACTTAATGCAGGCATGGATCAAAGTATTGTAGGTCAACCTATCTGGCTCCAATCTAAGG CGTAACATTTCATCCAGCAAATTTATTGCAGCTTGCGGAGATTCTGAGTTGACATAGCCCTGAA ATATATAACAAGACATATACCATGATGATGCTTCTCTGACCCTAAATCAAATGCAACTATGTGT AAAGAATTACCTTCATCAGCAAGTTATAGATAAGAACTGACGGAGTACCATGATCTAGAAGCAA AATATCATATCGTGCAAGCAGACCATTGGCACGACGTAAATCTCCTGCACTAGATCAATATCAA GTGTTTTTGCATCAGCTTCAGGCCATTTCACTAACACCAAGATTACATAATCAAGATTAGCTGC AGCCTGTTGAGCACGAGAAACAGTTACAGCTTAAGAATCTTACCAGCATTGATAAGAGCGTCAA GCAGACCATAGATAAGAGATGATGACAATTTGGGAGTCCCAGCAGCAGTTCCATACTCTATAGT CTCCAGCATTTGGAACGCTTCATCAATCCTCCGAGCCTTACCCAATCCCTTAACCAATACAAAC GATTCGACATCAAATTCAGGTTGACACACGAAATCAAAATTCAAAATTAGAGGAAAGAACCAAA ATTCAAAATTAGAGGAAAGAACCAAAATCACCTTCAAGATAGTAGCGTAACTAATAGAGTCGAC TCCAATTCCACCAGGTTCCGCCATCTCATGGAACATCCGAAGAGCCAAATCAATATTTCCACAG TGAACGCAAGCTTCGAGAACTGAGTTCATCACAATTGTGTTGAGCCTCCCATACCGTTTCTTAG CGGCTTCTACCTCCTCCACGATCTGACCAAGCTGACGACGGCGCGTGAGGAGAACAATGCGAGA AGTGAGAGGCTTGAGATTGATTCGCCTGGAATAAGGAGTAGCTCTGCGAGGATAACACCGTCGT GTCGGAACAAAGGAGCACGACGGAAGAAGAGGGAGAGGAGTGACAAGAGTAGAAATAGCTGAAA TCCGATTCATCTTCAAGGAGACCAGAAGCTACCCATCCGCCATTGATGGGCTTCAAGCTTCACC TTGAGGCTTGAGCTAATCGAAATAGATAACGTTGGAGAGAAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.108440791

Conservation Information
Conserved circRNAs	NA
PMCS	0.108440791

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G10690_circ_g.1

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