Detail information of Os07g0502550_circ_igg.1


General Information
CircRNA Name Os07g0502550_circ_igg.1
ID in PlantcircBase osa_circ_033953
Alias Os07circ08867
Organism Oryza sativa
Position chr7: 18958119-18963084  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method SMALT, Segemehl
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os07g0502550_circ_igg.2
Support reads 3
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGTGGTGGCTCGCGCGCCTGTGGCGCAACTGGTTGTGGATGTGGTGGTGCGACGCGGAGGAGT
GTATATGTAGGCGGCGGCAGCGGTTTGGGCGAGGAGgtgcgccagcgcgacgtggagcaggaac
ggcgccagggagcaggcgacgagcggcgcgacgacggactgcgtctgcaggtaccggaggaggc
actggagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCGCCAGCGCGACGTGGAGCAGGAACGGCGCCAGGGAGCAGGCGACGAGCGGCGCGACGACG
GACTGCGTCTGCAGGTACCGGAGGAGGCACTGGAGGAAGGAGAAGGCGAAGAGCCCCGGGACCT
GCGCGCGCACGAACGCCGACGCGGCGGCGGACACCGCCGGGTCCTGCCGGAGGAGGAGGAGGAG
GGGCTCGGTGAAGCACCAGAGTGCGGAGACGAGGACGGACACCGCCGCCGACATGAGCAGCGAC
GACTGCAGGTAGAGGCCCAGCATGCGGTACATCCGCGCGCCGTACGCCTGCCCGCACAGCGTCT
CCAGGGCCCCGCTCATGCCCGTCTGAATCAAACACACCCACATTTTCAAATTTCAATTTACCCA
TCATTTTGTAAGAACTTCAAATATTCTCGCAGATGCAATGCAACATTGATACTCCGGAAAAACG
TATGAATTTGGTAAGATTCAAATTTTATATGATTTTTTTTCGGTATGCCCTTTGAGAAGTATTA
AATTAAAAACTATTAAATCCTATAAAATTTCTAAGAAATACATCAATTCATATAAGTTTTCTAT
GAGTCTATCTCTTTTATTCGATTCATATTTTTTTTCTAATCAAACAATTATTCTTGTTTTTTTT
TCACTTTATTTTTTTACAATTCTTTTTGAAGTTGAATTTCAATCAGAATTGTATGCTTTTCTTA
TTCATTTGTTTTCTCTTTGATCCTGCATTTCAAATGAATCCTATGATTAAATGATGTGGACTTC
TTTGTACCGCGACCTATAAATTGATTTTATGTATATGAAAGTGAGATTGCAAGAGATATAATCA
TATATAAGCAACAAACCTGGGCGAACTGTCGTGAGATCGACAGCAATCACAAAATAAAGGGGCA
CAATTAATGCAGCGGGAGAAGTTGATGAAAATTGAAATACTCCATGGATATATGATACTAGTGG
TCCTATTTAATTCGGTGTAGCGACCATGATTTGTCCCATACCAAATGAAAGAACAACAAACGCC
ATCCCTTGCGGTAAACAAATCAATCATAAATGGCCCCCGGATACGTGATGTAGGCCTACCTGGG
ATCTTAATATTTCGAGAAGCGGATGGTTAGAAGCTAAATTGCAAAAATCGAAAAAACCATTTCC
TGTATGATCTACAATAATATATACAACTCTAAATTCCCAAAATTTGAATATTATTTAGAACGGC
TTCTGATAGCTGCTGGAGATTCTAGAACAAGTTAAAGATTATCATAAGCTTCATAAACAGAGCC
GTAGCTGCTCGTAGTCCACCAAACGTGATGAGTCGTTCGCTGAATATAATAACGATAGCAATGC
TTGCGCACATGCAATCGTGCAAAGCTCTTTGATTCGTTCAAAAAGGCAATCGCTCTTCAATTCG
TTCAGAGGGGCAATCGCTATAGAGATCATCAAGGAGACAGCAAAGGTTGCTGAAAAAAATGGCC
TTTCTGTCTCACGCTGGATTGGGGCCTGGCCCGTCTCTTTACATCCATCCATCCATCCATCCAT
CCATCCATCCATCGGACGTGTCCACCACTGCTCATCGTCTTCACTCGATCGTCCATCGGACCAT
TCATCATCCTACCTACTGCCATTGATGGCATCGTGCTAACCATTCATCACGTACGCAGCTTTTG
TTATCTGTACTATAGGCATGTGAGCGAGTAATTAAATAGCAGTACTGAATTGGTACTGTCTCCG
GTGGCTGACGAAATCATCGCTCGGTGAATAGTATAGCAGGGACTAGCTATAGAATTCAGAGAAC
AACAGGAAAAAAACCTGTACGGAGTTGAGCAAAAAATTATCACTAGCGAGCTCTGACTCCGGAA
ACGGGTTGTTCTAGACTCCGGAAATCTGTGAAGACGGTGATTCGCCTGACTTGTAGGAGTAACT
TTGACCATTCCACAGGCGACTCGATCGATCGATCGATTTCTGGTCGATGACGTGAGACGGAGTG
CCCTGACCGGTTCCAGTAATACTACCAGTTCCAGCGCGTGACACCACCAAACCGGAGCGAGAAT
TCAAGGCCATTTCAATTTTCAACCACCCAAATTTTTGCTTTCTTTAAACAAAAAACAGCACTAC
TACTATGGAGAACGGTTTTTTCTGTGGATTTCTGTGTGTAGCTAGCTAGCTGGCTAGTGGAGAT
CGACCGACGACCGGTTCGTCAGTATATATACATGGAACCCGTGGCAACATCTGTTGTTTTTTTT
TTAATTTCGCGCCATGACGCACGTTGAAATGATCGCATTCTCCGTGCAGTTTCTTCTACACAAC
GAGACAACCAATCAAGCGTTGTGTCGTGCAAGTCGCAGCGATCAATTAACGACGTGCGGTGAAT
TTTTTCTGAGAAACGGGTGGTTCCAATCCACGGGCGGCGCCTACCGGGTGATTTATCAGTTAAT
CCTCCAGAAGACACGATAGAGCGCTAGCTATCGATTGCATGGCTCATCTAGCTAATCGCGAGCT
TGGACAATCTGGGAGTCGTAGAAAGCAACGGTTTTGGCACCATCAGGCAAACCGATCGATTGAT
ATGTGGGGCGGAGAGAGAGAGCCGTTTCGCGTAGCCGTATACTATTTCTCCTCCTCAACTTCAG
AGCATGTTTATACAGTTTCAACCATTAAATTTAGCTTCACAAAAATTTAGCTTCACAAGTTATA
AAGCAGTCTAAACTACGCTTCACATCTCTAGTTTATTTTGTAATAACACTTCACCTAACTTCGC
TCAAAGCGTGCATTTCAGTACTAGGGTAGCCCACTTAAATGTTTCTATATATAGCTCTTGGTTA
ATGATGGCATTTCACATCCGATGTACTATATAGTTCTGTTTGATTGGTGTAGGGCTAACAAAGA
TCCAAAATTTCCTTTTGACATAGCAAAAGAATGGAACAAATGATATAAAATGATGGCAAGCTAG
TTGTCGTCTGGATTAAGAGAGAATCCATTATATGCCACTGACTTTGTCACATGTCTATGATTTG
CCACTGACTTTATCATGTTCTACAATATGCCATCGACTTTTGCTTAACTTCTATAATTTACCAT
CGCCGTCTGGTTAGTCTCCGTTAGTACTGTACAAATTTGCCAAAATGACCAAAATACCCCTGGG
ACAAAAACATTCAAAATTTGGATAAAAATTCTGAAATATAAGATTTTAAGTTGTTGGCCAAATT
TTGGATGTTTACAATCTTATGTTTATAATATGATATTTTGAATTTTTTATCCAAATTTTGGAAG
TTTTTGTTTTAGGGGTATTTCGGTCATTTGGACAAAATTGTACAGTACTAACGGAGGCTAATCG
GACGGCGATGGTAAATCGTAGAAGTTAAGCAAAAATCGATGGTATATTGTAGAATGTGACAAAG
TCGATGGTAAATTGTAGATGTGTGACAAAGTCAGTGGCATATAATGGATTCTCTCTAGTGGAAG
TGTGCAATCCCATTCAAATTAAGGTCAAACGATGTATCTTGCACGAGCTTTGAATACATCCATG
TGACCCCTGTTTGCCATTCGCATATCGTTGTTACCACTAGTACTGCTAGTAGCTAGCTAGGTAC
GTGGTTGCAATCTACTAGTACTGTGGAAATTGAACTTTGACTTTGTATAGTTTTGTAGGCTGTG
TGTTTATGTGTTTAGATCTAAAGTTTGATCCAAACTTTAATCCTTTTCCATCACATTAACCTGT
CATACACACATAATTTTTTAGTCACATCATCTTTAATTTCAACCAAAATCAAAACTTTGCGCTG
AACTAAACACAGCTGTAGTTGAGTCGCTTGTAAGTGAGTAGTTGAGTCACTTATACGTAGATCT
TACTTTGTTATAATTCATATGCCAATGCTACAACTGCAATATACTAGTAGTGCATATGATGATC
ATCGCCACAGATAAAAACGGCAATGGAACGGCACGGCATTCGCTGGGAAAGAAACACGTAGGCA
GCGCGACGCGTTGGCGAAATGTTCAGGACGTTCTTTATGTAAATTGTGCACGGTGATCCGATAG
TACTATATATATATATATGTATGTATGTATATATATATATATATATATATATACATACATATAT
ATATATATATATACTACCTCCGTTTTAAAATATAGTTATTTTTTTGCACAATAATTTATTTTAA
AATAAAGCTATTTTTCCACCGGCCATCTCCTGTGAATCAATCAAAACCATTCTCTTCACCTATT
TTCTCCTCTTTAGCAATCACAACCTTCCTTTTATTATTTCTACCTATTTTTAATACCCATGCTT
GCTTCAAAATTCTTATCGGATGAAAGTAGCATTAATAATTTATTATGCGTATAGTTAATGGAGT
TATCGATGCGCGTGTGGAGGTGAGGACGATGATGCATGGTCGCGCGCGCATGTGGGCGTGTGGA
TCGCCGGCGGCGTGGGCGGCGGATCCGCCGGTGGACGCGCGCGCATATACTACTAGTGCAGGGC
AGCGTAGTGTGTGGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGTACGTACGACGAAGGC
GTAGCCGGTGACGGTGGCCCACGAGTTGCCGAGCGTGGCGCCGGCGAGGTGGACGTCGCCGAGG
TGGCCGGAGAACATGACGGACACCAGCGGGATGGCGTAGTAGGACATGTTGGTGAGCACCATCG
GCACCGCGAACCGCGTCTGCGCCCACGCCTCCTCCGTGTCCACCACCCGCCCCACCCACCACCG
CCGCGCCCTCCTCACCTCACCTCCACCCTCCTCCTCCTCCTTGCCGCCGAGCAGCGGATCCGTG
GACGCCATGACGCCGTCGTCGTCACGGCCGGAGCAACGGACGACGACGACGACAATCTCTCGCC
TGCGGTGGTGGCTCGCGCGCCTGTGGCGCAACTGGTTGTGGATGTGGTGGTGCGACGCGGAGGA
GTGTATATGTAGGCGGCGGCAGCGGTTTGGGCGAGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.21363868
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015