Detail information of Solyc12g026400.1_circ_g.1


General Information
CircRNA Name Solyc12g026400.1_circ_g.1
ID in PlantcircBase sly_circ_003596
Alias NA
Organism Solanum lycopersicum
Position chr12: 23046491-23054774  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc12g026400.1
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads 3
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc12g026400.1.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAAGAAGAATTGACCCTACTACCCCAGAGTCTATGATGTTGATGCCATCAGATGTAATCCTAA
GTTTCGATGGGGTTGATATTGCCAATGATGGAACAGcgttgcttaatgtggatgatgatgagtt
ctgggagggggtctcacctgtggaatttggggatttgccagcgcttcaagatgctgtgacagta
gtaggtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.136757674
Functional Information
Coding potential Y
Potential coding position 23054746-23046574(+)
23054616-23054771(+)
Potential amino acid sequence MGLILPMMEQRCLMWMMMSSGRGSHLWNLGICQRFKML*(+)
MENPDLRLSMGMKPDQKGVRIRRIDPTTPESMMLMPSDVILSFDGVDIANDGTALLNVDDDEFW
EGVSPVEFGDLPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSG
NSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVITHFIKDYEKNGAYTGFPILGVEWQKM
ENPDLRLSMGMKPDQKGVRIRRIDPTTPESMMLMPSDVILSFDGVDIANDGTALLNVDDDEFWE
GVSPVEFGDLPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGN
SGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVITHFIKDYEKNGAYTGFPILGVEWQKME
NPDLRLSMGMKPDQKGVRIRRIDPTTPESMMLMPSDVILSFDGVDIANDGTALLNVDDDEFWEG
VSPVEFGDLPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNS
GGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVITHFIKDYEKNGAYTGFPILGVEWQKMEN
PDLRLSMGMKPDQKGVRIRRIDPTTPESMMLMPSDVILSFDGVDIANDGT(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016