Plant Circular RNA Database

Detail information of AT2G22620_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT2G22620_circ_g.1
					
						ID in PlantcircBase
						ath_circ_014400
					
						Alias
						2:9608085-9610171
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 9608085-9610171  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT2G22620						
					
						Parent gene annotation
						
							Putative uncharacterized protein At2g22620
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G22620.1:4
AT2G22620.2:4
AT2G22620.5:4
AT2G22620.4:4
AT2G22620.3:4

General Information
CircRNA Name	AT2G22620_circ_g.1
ID in PlantcircBase	ath_circ_014400
Alias	2:9608085-9610171
Organism	Arabidpsis thaliana
Position	chr2: 9608085-9610171 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT2G22620
Parent gene annotation	Putative uncharacterized protein At2g22620
Parent gene strand	-
Alternative splicing	NA
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G22620.1:4 AT2G22620.2:4 AT2G22620.5:4 AT2G22620.4:4 AT2G22620.3:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACTTTGAAGAAGAAGAAGAAGTTGTAGAAGAAAAACTTGAACAATGATCCGACCCGGCTTACT
TGCCGGAGCTCCAACTTTCATCTCCACCACAATTCAttgtcagtcttctgtttcttttccggtt
cataccagactacgtcccaatacctatttccataacaatacgccaaaagtttttgcaattagac
gttattaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TTGTCAGTCTTCTGTTTCTTTTCCGGTTCATACCAGACTACGTCCCAATACCTATTTCCATAAC
AATACGCCAAAAGTTTTTGCAATTAGACGTTATTAAAAAGTTATGTGCCGTATGTAATTATGTT
TGTCTTAATGTAACATGTTCCAAACATATAAAGAAGTTGTGTTACAAACTCGTATGTTAAAAGA
CTAAAAGAATCTTACCCGCGATCATCAATTTTGTCGTCCAACACATTATCGATACCATGGTATT
TTATCCCAGTTATTAAGCCTTCTGGGTTCGAGAAAGTAACTTGGACAATACCATTATCAACTAC
CACCTTAAAACCAACAAAATTCTTATTATATTATGTATAATATATATATGGGGAAAAAATTGAA
TAATTCTTACCGTATCATGGCCAACTCTCCTTAGCTGAACTGTTAAGGCTGGTATGTTTTGTCC
AGGCTTTGTGATGTTAAGTTTGTTTCTGTAATAGAAAAAGATTGTAGCAAAAGATAAATCAGTT
AGACCAAATCCGAGAGAGAGTAGATATTTTTGGATTAGAATCTTTCATTATTTTATTTAAGTTT
AAATAATATGAACCTAATTGTTAAATATAAATTTAAAAGTATTTAAAATAGCTTTAAAAAACAC
ACTCGAGTTCTTAGCATTAAAATTACAAATTTATTGGTCCAATAGTTCTAATTAGAGTATATTA
TATGAAAACAAATTAATTTATTTTATTCGATTTTTTGAAATGGTTGCCTATATCCATGCAATCT
AAGCAAGATAGTTTTTGGTCTACTATTCAGAGTCAAGGATCTGAAAACGAGTTATTTCATATTT
GTTTGGGTTTAAAAACTTCAACATTAATACTGTAGCAGTTAAACCCAAACAAATATGAACGGTC
AAATTAATTAGTTGAAGAGTGTTGAAGACGCAAAGAATAATTCCAAATGAAGGAACACAAAAAT
CCATCATGGTATTGAAAGGCATAAAGAACATAAAAGTACTATATAAATAAATTAAATAATTAAT
AATTTGTTAAAAGGAAAATATACCAAAAATATTTGTATTATGTGTGAGAGAACCGAGACGAAGA
CAAGTAGTTTAGAGAAAAAAGACAAGTAGGTTTTGAGCCGAAAGGTAAAAGTAACCCAATATTT
TTCCAACGTTGTAATTAAGGATAAAATAAACGAAGATTGAAAGTTGAAACTTGAAAGATTAATA
AACCAATTCCTTAAAACATTGTATTCTTCGTTTTTTGTTCTTTTTTCTTTTGTCGTTTAACGTT
AATAGTAACTTTTTAACACATGTCTCGTGATGATCTTGGTTTCCAGATTCTCCTCTTAAGATAT
TTTACGTTATAAAATTTGTATGTGATGGTATATATATATATATATGTACGTGTGTTGTTAGATA
TAAATTCAAATTAAAAAAATTAGCCAAACATTGTCATTACCAACGAAACTTCAACTATGGTTTT
GGTAAACCATTTGTCATATAGTCAAGGAAATCAAAACCATTTTCATAAAAAAAAAAAAAAAAAA
AAAAATACCTTAACAAGTTAAAATGGAGATGGAATCAAGGAAACCTTAGCTTTTTCTTTTGTTT
TTTGGTTATTGACCAAAATTAAAGCTAACCATTTACTTTAATCATACTTTCATCCTTAGTTTTT
TTAATGGTTTAATTCATCTTAAGGCTTACAATTTTACAATTATACTCAGTGTATAGTTTCCTCA
AGAACAGAAGAAAAAGACATGTGAAAAATTACAAAATAGTACACCAGATTCTGATGAAAAAAGT
TAAGAACCTCTGATTGTTTGTTCCCTTTCAGTAAGTTTGACATGTGAACTTGGAAATTTAAAGC
TTGTGAAATCAATTTTTGCGTTAAAAACAAAAATAAGGTAAAAAAACACTAATTAATGGGTAAA
AACAACCCGACCCGACACAAAGAGAGATGGGTTAAAGAGAAAACATACTGTGATCTCTGTGAAT
GAACACTTTGAAGAAGAAGAAGAAGTTGTAGAAGAAAAACTTGAACAATGATCCGACCCGGCTT
ACTTGCCGGAGCTCCAACTTTCATCTCCACCACAATTCA
						
					

			
		

Sequences
Splice junction sequence	CACTTTGAAGAAGAAGAAGAAGTTGTAGAAGAAAAACTTGAACAATGATCCGACCCGGCTTACT TGCCGGAGCTCCAACTTTCATCTCCACCACAATTCAttgtcagtcttctgtttcttttccggtt cataccagactacgtcccaatacctatttccataacaatacgccaaaagtttttgcaattagac gttattaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TTGTCAGTCTTCTGTTTCTTTTCCGGTTCATACCAGACTACGTCCCAATACCTATTTCCATAAC AATACGCCAAAAGTTTTTGCAATTAGACGTTATTAAAAAGTTATGTGCCGTATGTAATTATGTT TGTCTTAATGTAACATGTTCCAAACATATAAAGAAGTTGTGTTACAAACTCGTATGTTAAAAGA CTAAAAGAATCTTACCCGCGATCATCAATTTTGTCGTCCAACACATTATCGATACCATGGTATT TTATCCCAGTTATTAAGCCTTCTGGGTTCGAGAAAGTAACTTGGACAATACCATTATCAACTAC CACCTTAAAACCAACAAAATTCTTATTATATTATGTATAATATATATATGGGGAAAAAATTGAA TAATTCTTACCGTATCATGGCCAACTCTCCTTAGCTGAACTGTTAAGGCTGGTATGTTTTGTCC AGGCTTTGTGATGTTAAGTTTGTTTCTGTAATAGAAAAAGATTGTAGCAAAAGATAAATCAGTT AGACCAAATCCGAGAGAGAGTAGATATTTTTGGATTAGAATCTTTCATTATTTTATTTAAGTTT AAATAATATGAACCTAATTGTTAAATATAAATTTAAAAGTATTTAAAATAGCTTTAAAAAACAC ACTCGAGTTCTTAGCATTAAAATTACAAATTTATTGGTCCAATAGTTCTAATTAGAGTATATTA TATGAAAACAAATTAATTTATTTTATTCGATTTTTTGAAATGGTTGCCTATATCCATGCAATCT AAGCAAGATAGTTTTTGGTCTACTATTCAGAGTCAAGGATCTGAAAACGAGTTATTTCATATTT GTTTGGGTTTAAAAACTTCAACATTAATACTGTAGCAGTTAAACCCAAACAAATATGAACGGTC AAATTAATTAGTTGAAGAGTGTTGAAGACGCAAAGAATAATTCCAAATGAAGGAACACAAAAAT CCATCATGGTATTGAAAGGCATAAAGAACATAAAAGTACTATATAAATAAATTAAATAATTAAT AATTTGTTAAAAGGAAAATATACCAAAAATATTTGTATTATGTGTGAGAGAACCGAGACGAAGA CAAGTAGTTTAGAGAAAAAAGACAAGTAGGTTTTGAGCCGAAAGGTAAAAGTAACCCAATATTT TTCCAACGTTGTAATTAAGGATAAAATAAACGAAGATTGAAAGTTGAAACTTGAAAGATTAATA AACCAATTCCTTAAAACATTGTATTCTTCGTTTTTTGTTCTTTTTTCTTTTGTCGTTTAACGTT AATAGTAACTTTTTAACACATGTCTCGTGATGATCTTGGTTTCCAGATTCTCCTCTTAAGATAT TTTACGTTATAAAATTTGTATGTGATGGTATATATATATATATATGTACGTGTGTTGTTAGATA TAAATTCAAATTAAAAAAATTAGCCAAACATTGTCATTACCAACGAAACTTCAACTATGGTTTT GGTAAACCATTTGTCATATAGTCAAGGAAATCAAAACCATTTTCATAAAAAAAAAAAAAAAAAA AAAAATACCTTAACAAGTTAAAATGGAGATGGAATCAAGGAAACCTTAGCTTTTTCTTTTGTTT TTTGGTTATTGACCAAAATTAAAGCTAACCATTTACTTTAATCATACTTTCATCCTTAGTTTTT TTAATGGTTTAATTCATCTTAAGGCTTACAATTTTACAATTATACTCAGTGTATAGTTTCCTCA AGAACAGAAGAAAAAGACATGTGAAAAATTACAAAATAGTACACCAGATTCTGATGAAAAAAGT TAAGAACCTCTGATTGTTTGTTCCCTTTCAGTAAGTTTGACATGTGAACTTGGAAATTTAAAGC TTGTGAAATCAATTTTTGCGTTAAAAACAAAAATAAGGTAAAAAAACACTAATTAATGGGTAAA AACAACCCGACCCGACACAAAGAGAGATGGGTTAAAGAGAAAACATACTGTGATCTCTGTGAAT GAACACTTTGAAGAAGAAGAAGAAGTTGTAGAAGAAAAACTTGAACAATGATCCGACCCGGCTT ACTTGCCGGAGCTCCAACTTTCATCTCCACCACAATTCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.110673538

Conservation Information
Conserved circRNAs	NA
PMCS	0.110673538

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR5021 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR5021
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT2G22620_circ_g.1

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