Detail information of Os05g0373300_circ_g.1


General Information
CircRNA Name Os05g0373300_circ_g.1
ID in PlantcircBase osa_circ_027671
Alias Os_ciR9844
Organism Oryza sativa
Position chr5: 17985634-17989033  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os05g0373300
Parent gene annotation Similar to predicted protein. (Os05t0373300-01)
Parent gene strand +
Alternative splicing Os05g0373300_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0373300-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACATTCAAGAAACAAAAGATTCTATCGTGAGGGCATCCGATCTGCCATTGTCAATCCTCATC
GTGGGCGTTGGAAATGCTGATTTCAAGCAAATGGAGagtgatccaatgttagtgatctacataa
gaaaggatgcaaggctagaagagattggccgtactgaagtgatactgaactcactggaaccctc
gtggatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGTGATCCAATGTTAGTGATCTACATAAGAAAGGATGCAAGGCTAGAAGAGATTGGCCGTACTG
AAGTGATACTGAACTCACTGGAACCCTCGTGGATCACAAAGGCTACAATAAGTTACCAATTTGA
GATTATACAGCCGCTTGTGTAAGTTTATAACATATAAATGTAGGAATCACTTGTAGACATATCC
TACTTACCAATTATCAATACACTTTTGTTTCCATTTATGACAGATTCAAGATATATGACATCGA
CACAAGGTACCATAACACGCCAGTCAAGGTATATTTTGTTCCTTCCGTTCATATTTTTCCCTCT
TTGAACTTTTCTTTCTCATGTGCCCATATTCAATTTGGATATATTCAATCACCTATAAATATGA
TCTTGAAATCAATCCATGGTTTTTCATTTATCGCACCATTTTTCTTTATTATCATATGGCTATA
TTTGATGGTGTGCATCTTTTAGTCCTTTCCTATTTGTGGATACTGATGCGTATTTTGGGGGCCT
TGAGCTTCTCATGAAAATTCTTCCAACACGCATCACATTACATAATTAAACAAAAATGGTGCAT
GTATACATTTCATATGTGTTGAAACTAGCTGGGTGATGATTTGACTGAAGAATGGCCTCAATTG
TTAATATTTTCTCAGAAAACCAGCTGGTGACTTGGCTGTAGAATTGTCTCATCTCATTTAGGCT
CCTCTACAGTTTTACCTTGGTCACCTAAATATGGTATTTGGGAAATAAAGTGCATTACTAAGAG
AATATATAGTAACATTGATGAACAATTGATTTAACCCATTCCAATTCTGTGCCATTCCTAGCTT
GTAAAGTTACTACTACTTCTGAATCATGTATTCGTTGTTTTATGCAGACACTGAACTTGGCTCA
GCAAGATTTTCTTGGAGAAGCATGCTGCAATTTGTCAGAGGTATGATTCCAGTTACAGGATCCT
TTGCAAATAATATGAATTAGATAGTTCCAGTTGCAGTATACAAGGCATCTGAGCACATGCATAG
GGGCAAAGAAACAAGATCGTCTTCTTTTAATATATATATTTTGTTCTTCGTACAGATTGTCACA
AACAATCACAGCCTGACACTTAACCTCAGAGATAGTTGTGGACATACCCTTCTAGGAACAGTGA
CAGTACATGCTGAAGAAAGTAATTCCTCAAGGATGGCAGTTGAGATGACACTCCATGCCCTAAA
CTTGGAAAACAAAGATGTATTTTCAAAAAGTGTATGATACTACTTCCTCTGCTAGTAAGGTATG
CTACTAGTTAGCAAATTAGTAACACTCGATTTACATTTGATATTATTCACACAGGATCCTTTCT
TGAGAATATCAAGACTGGTGGAAACTGCTGGTCCCATTCCTATCTGTAAAACTGAAGTGATCAG
CAACAATTTAAACCCTGTTTGGAGGCCCATAATACTAACATCACAACAATTTGGAAGCAAGGCA
AGTTCAATTCTCTGACTTTTGGATATTTGTATTAGTATTGCATTGCTTGTATAGTCCGAGGTTG
GTCTGATGTTTTCTCTGTTTTAAATTATTTCAGGATAACCCATTGCTAGTTGAGTGTTTTGATT
TTGATTCAAGTGGTGACCACGAACTTATTGGGTATGCACAAGGACTAAAGAATCATTTTGCCAT
CTTTTGCTCTTGTTGCTGAGTTTAATTATATATATATCCTTGCTTGTCTTACAAATAGGACCTT
CCAGACAACTATCACTCAACTTGAGAATGTATATAATTCAAAGTCTGGAGCAAATTTTTTCAGC
CATAAGGGACAGAAAAAGGTTAAGAATTTCTTATTTTATGTTATCTACTACACAAAAAGGTAAC
ACAAAATCTAATATTTCTCAATATATCTGATCTGTTTCAGTTGAAGGGACAATTGTTTGTGGAT
AAGTTCCAGGAAAAAGTTCAACATACTTTCTTGGACTACATTTCCAGTGGTTTTGAGCTAAATT
TTATGGTGGCTGTAGATTTCACGGGTTAGCGCCATGTTTCAGCTTAAATATATAGCACTGTCAA
TCTCATATATATTTACAAAAGTGCAACCCTGGTGTGTTTTCAGCTTCAAATGGTGACCCCCGTT
CACCTCAGTCTTTGCACTACATTGACCCCTCTGGCAGACCGAACTCATACCAGCAGGTCAGGGC
TTGTTTGATCAAGCTTATTCTCGAAATGAAAGAAAGCCTGCAAACTGAACTCTTTAATGTATCA
GGCAATACTAGGGGTTGGCGAAGTTCTGCAGTTTTATGACAATGATAGGCGATTCCCGGCATGG
GGTTTTGGAGCGAAGACACCACAGGGCTACATATCCCACTGTTTTAATCTGAATGCAACTACCA
ATGATTGCGAGGTGAGGTTCATGGTTGATGAGTTATTTTTTTACACGTTAGCGCTTTGCCCTCC
CCCTTTCCTACAATATGACATAAGACATTCGTTACCATTGAACCTCTTAGATTCATGCTTGGTT
TGTTTCACTATTTTCCAATAGTAGTCTCTAGTAAAGCCTCTCATGCAACAAGTGCTTTTAAGCC
ATCTTTTGTTCCACTAAAAATCCCTCCAGCCTTTGTAATTTCTTTAACTCATTCTTGTGTGTGG
ATATTGCTGATTCATAATTTTAGGAGCTAGAAGGACTTGGGAATGTTAAAAATTGGCATGGCTT
TTCTTATAACATTCACAATTAGTTAATTGCTATTCACTGCTACATATGTTTTTACTATTAATAT
TTGTGTATTACTGTAGATGGAATGTACCTTTTGTATTCAATTTCATCACTCTTGTAATAACTAT
ACTATGTTACCTAATGCATGGCTCTGGTACTGCCAAATCATGTGTGGTGTTGTTCCTGAAATCC
TTCTGAACTTTGCCAAAATAATGAGCAACATGACTACTAATGCCAATTGTATTTCTTTTTTTTT
TGCAAGTCATTTGTATTTAATGGTTGATCCTATGTATTTTCTGTTTCTACAATTTATATCATGT
TAATTTATGTTATGAATTTTCAATTACCATTACAGGTCGTCGGAGTTGAAGGCATCATGTCAGC
ATACACCTCTACCCTTTACAGTGTCACCCTTGCTGGGCCAACTCTGTTTGGGCCAATTATCAAC
AAAGCTGCCGAGATTGCCAGCCACTCCCTTCAATACGGAAACAACAAATACTTTGTCCTACTCA
TCATCACGGTACGCGACCAGATTTCTGAACATTTTGAGTTTTGACGTCTATCAAGTCTGTATCA
CTCACCTGAACATTTTTTGCAGGATGGAGTTCTCACTGACATTCAAGAAACAAAAGATTCTATC
GTGAGGGCATCCGATCTGCCATTGTCAATCCTCATCGTGGGCGTTGGAAATGCTGATTTCAAGC
AAATGGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.117030123
Functional Information
Coding potential Y
Potential coding position 17985644-17989030(+)
Potential amino acid sequence MLVIYIRKDARLEEIGRTEVILNSLEPSWITKATISYQFEIIQPLVFKIYDIDTRYHNTPVKTL
NLAQQDFLGEACCNLSEIVTNNHSLTLNLRDSCGHTLLGTVTVHAEESNSSRMAVEMTLHALNL
ENKDVFSKSDPFLRISRLVETAGPIPICKTEVISNNLNPVWRPIILTSQQFGSKDNPLLVECFD
FDSSGDHELIGTFQTTITQLENVYNSKSGANFFSHKGQKKLKGQLFVDKFQEKVQHTFLDYISS
GFELNFMVAVDFTASNGDPRSPQSLHYIDPSGRPNSYQQAILGVGEVLQFYDNDRRFPAWGFGA
KTPQGYISHCFNLNATTNDCEVVGVEGIMSAYTSTLYSVTLAGPTLFGPIINKAAEIASHSLQY
GNNKYFVLLIITDGVLTDIQETKDSIVRASDLPLSILIVGVGNADFKQMESDPMLVIYIRKDAR
LEEIGRTEVILNSLEPSWITKATISYQFEIIQPLVFKIYDIDTRYHNTPVKTLNLAQQDFLGEA
CCNLSEIVTNNHSLTLNLRDSCGHTLLGTVTVHAEESNSSRMAVEMTLHALNLENKDVFSKSDP
FLRISRLVETAGPIPICKTEVISNNLNPVWRPIILTSQQFGSKDNPLLVECFDFDSSGDHELIG
TFQTTITQLENVYNSKSGANFFSHKGQKKLKGQLFVDKFQEKVQHTFLDYISSGFELNFMVAVD
FTASNGDPRSPQSLHYIDPSGRPNSYQQAILGVGEVLQFYDNDRRFPAWGFGAKTPQGYISHCF
NLNATTNDCEVVGVEGIMSAYTSTLYSVTLAGPTLFGPIINKAAEIASHSLQYGNNKYFVLLII
TDGVLTDIQETKDSIVRASDLPLSILIVGVGNADFKQMESDPMLVIYIRKDARLEEIGRTEVIL
NSLEPSWITKATISYQFEIIQPLVFKIYDIDTRYHNTPVKTLNLAQQDFLGEACCNLSEIVTNN
HSLTLNLRDSCGHTLLGTVTVHAEESNSSRMAVEMTLHALNLENKDVFSKSDPFLRISRLVETA
GPIPICKTEVISNNLNPVWRPIILTSQQFGSKDNPLLVECFDFDSSGDHELIGTFQTTITQLEN
VYNSKSGANFFSHKGQKKLKGQLFVDKFQEKVQHTFLDYISSGFELNFMVAVDFTASNGDPRSP
QSLHYIDPSGRPNSYQQAILGVGEVLQFYDNDRRFPAWGFGAKTPQGYISHCFNLNATTNDCEV
VGVEGIMSAYTSTLYSVTLAGPTLFGPIINKAAEIASHSLQYGNNKYFVLLIITDGVLTDIQET
KDSIVRASDLPLSILIVGVGNADFKQMESDPMLVIYIRKDARLEEIGRTEVILNSLEPSWITKA
TISYQFEIIQPLVFKIYDIDTRYHNTPVKTLNLAQQDFLGEACCNLSEIVTNNHSLTLNLRDSC
GHTLLGTVTVHAEESNSSRMAVEMTLHALNLENKDVFSKSDPFLRISRLVETAGPIPICKTEVI
SNNLNPVWRPIILTSQQFGSKDNPLLVECFDFDSSGDHELIGTFQTTITQLENVYNSKSGANFF
SHKGQKKLKGQLFVDKFQEKVQHTFLDYISSGFELNFMVAVDFTASNGDPRSPQSLHYIDPSGR
PNSYQQAILGVGEVLQFYDNDRRFPAWGFGAKTPQGYISHCFNLNATTNDCEVVGVEGIMSAYT
STLYSVTLAGPTLFGPIINKAAEIASHSLQYGNNKYFVLLIITDGVLTDIQETKDSIVRASDLP
LSILIVGVGNADFKQME(+)
Sponge-miRNAs osa-miR2928
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015