Detail information of GLYMA_17G186900_circ_g.2


General Information
CircRNA Name GLYMA_17G186900_circ_g.2
ID in PlantcircBase gma_circ_007459
Alias gma-circRNA2355
Organism Glycine max
Position chr17: 23827350-23832285  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method find_circ
Parent gene GLYMA_17G186900
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_17G186900_circ_g.1
Support reads NA
Tissues flower bud
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered KRH04786:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGTTTAACTAAATTCATCCTACCTTTGGATGAACTGCTAATGCCACATCACCAAATAAAGTC
TCCGGTCGTGTAGTAGCCACAGTCAAGAAATCACTCcttttgaaatctttccggaattatggtc
agttctcctttttcaactgcttgaagagctttctcagcaagaggctccatagtcacaaaccact
gcttacta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTGAAATCTTTCCGGAATTATGGTCAGTTCTCCTTTTTCAACTGCTTGAAGAGCTTTCTCA
GCAAGAGGCTCCATAGTCACAAACCACTGCTTACTAACAAGTGGTTCTATCACCTGATTAAAAA
ATATGAAGAAAAGTTCCAAGTGAGAAACAAATCAGCAAAAAAATAATGCAAGTTATCAACTAAG
AAAATCTTACTTCTCCACCACGCTGAGATCTGGGAACTCGTAAAGTGTGTGGTTCTTTTTTCAC
AGCTAATCTTGTCTCCTCAAGCTCTGCCCATAGTTTTTTTCGAGCCTCAAAACGATCAAGACCA
CTATGACAGATGTGGCTCGCATATATTAGTCACAACAACATATGGTAAACAACAGCTTAATAAG
ATAGTTCTACAAATACCTGTACAACCCAGCAACATCATTTAGTGTTCCATCCTTATTCATCACA
TTAAGTATCGGAAGACCAAGCTTTCGAGCAAGTAGATAGTCATTATGATCATGTCCTGGACTAA
TTTTCAATACTCCTGTTCCAAATTCTCTATCCACATGCTGTGACACATAACATAAATCAATATA
GACGAATAATGACAAAAATTTCACATTAGAATTGTCCATGAAACAGTGGTTGCAAAATCATTAG
TGGCAAAAGTAGCAACATTTAAAAAATGTATTATAAATTGTAACAAGGAAATTTTATTGCCACA
AGCAGAAAAGTTAGATTTAGAAAGTAGCTGCTGAAAATCATATTCAAATATTCTGTATTTACTG
CATAGATGATTTATAGGCAAGTCCTAACTGATTTAGAGGAACAAAATCTCCTCTAATTATGTGT
ATTATTATAATAAGCCAATATAATTCAAAATCCATGGTGTCATTCGAGCACACGGATTCAGCAG
CTCTATGTCTCTCATTTCCCTCTTTCAACAGTAGCTATTAGAACATACAGGGTGTTATCAGGTT
GGGATTGTACTAGTTGTATTGTATTACACATCAACTTGACTTAGTTCATTAATTTAGATATGCC
AAAGCAAAAAGTGTGTTTTTCTAAAGTATTTTACATAGTATTTACAATAGAGAGAAGAAATAAC
TGCAGGACTAATTACATCCTAATAATCAGCTGATCGGAAACAAATATAGTTGTTGATTGTAATT
CGATATTTAGTTTCCTTATATTAGCCTTTGATAAGATAATTGATTTGATCGAAAATTGCATGAT
CTTGATAAGATTAGATATGGGTACAAATGCTGTAAATCATTCACTGAAAATATAGATTCAACTA
TAGTTAGTGTAAAAAACATATTTTAGAAATGCCTAAATCTAACTACTATTACGGGAAAACATAC
TTTCCTCCTTTCCTTTCTTCTCTCTTAGTATTCTTTTACAAGAAGGAAAACTGATGTATGATAA
GGATATATGAAATTCAAACAGCTAATTACAAAAGAGATCCAGATTGGGAAAAAGCAAGAGAAAA
GGCCCTCACCAATTGTAATCAGCAATCATACCACAAAGAAACAAAACCTTTGCATGGAAGATAA
GAAAATCAGAAGAAACCATATGCATTGGAAACGTACTAGATGATAGCTTACTTGTCAATCAACT
TTAAGTCTATTAAGAGACCTACTATGCATCCATCGATGAGCAACTCACATTTTAATTTCCTAAT
TAGTAGATTGTACTAAAAGGATACCTAGAGTTGAGTTTTCACTTTTCTGCCTCTATCCTGATTC
ACAAACACTATATGTACATATACTATTATTAAAAAAAACATGGATTTAGAGAAAAGGTGAAGGG
GAAAGAGTCAAGAATATACATAAAGTAACATCTTAAAAGACTCATTTACTGATCACCAAAGCAA
TACGTATAAAATGACAGCAACAAATGCATTTATTATTCTCTTCTAATTGTCTAGTAAACATTAA
ACAATCTTTACATAAATTGAATTTCTAATAACAAATCAAAGCAAACAGCATAATCAGTAATCAA
GCACGACAATAATAATAATAATATTAAAAAGAACTACATTAGTTGAACAAATTGGCACTTCTAT
ACCTTGTCAGCAATGATAGGAACATGACGGCCAAATGTCTGAGGTACAATTGCCATCATACCAA
TATACTTGGAATATCGATCATCCTGCAATTTAGTGGAAAATAGAATATTTTAGGATTTGAAAGG
ACAAAATATCATAAACATTAATTTCTGATAACAAACTGTACAGGGAAATTTAGATTATAAGGTC
AGACATAAATTGGTTTGATATGCAAGAATCTAAATTGCCAAGGCAAAGCATCTGTTAGGGTACA
AAATATACTTTTTTTCTTTTTTTATTAATGTACGAAAATTTAAAAGTCCATTATTTTCGTTATT
AATTATAAACTAAATGGGTGAATTTGGAATTTTATGTATCCTGTTAGAATAATCACATGCACCA
CACATTAAATACATTTAGCGTTGATATGAATTAGTGTCAAGGACATATCACCCACTTAGCCTTG
TAAATTTTATCATGAACTGTATGTGTATGTGTGTGCGTGCAACTATGAAGTCGAGTGTCTTTTC
ACTAAATAATTCCATCCCATTTCTTTCTCATTTCAATATGATATGATATCAAAACCATCCTCCT
TTACCTAATTCATTCCACTACTCAAGTCTCAAGATGCAGAACCACTTTGTATGGTGATTGATTT
TATGTGGTTCTAATTTTTAGTAGCTTTATTCCCTCTTGCCTCAAGCAGCCAAGCTCCCATCCAA
AGAGCTTGGCTTCAACCCCTTCCCACTGTCCACAACTGCGAGTGACCTTTAACAGCCACCAAAC
TTCTGTTGAATTTTACAGCAAAATATACATCTAGATTCAGCCACCAGTGAACTTTTCAGGCGAG
ATAATCCCCCAGTACCTTTGTTTTGTGATTTCTTTTTTCTCTGCTGTAAACACTATCCAAGATT
GAACCCAGCCACTTGTAGTGGCCACCACATTTTCAACCATGTCTGAAGAAACTAAAAAAACTGA
AAAGATGAACATAAAGAGAGAAAGATTTGTGTAAACTGAAAATGATATTAAATTAGTGCTATTG
AAGTACAGGTACGGATATTTATACTGACTAGACTACAGCTCAGCATAATTGACTTCAGTTAGTT
AGTTACAACAGATACTTTGTTACAATAGACACTAAGTGATTACAAACTTAACTAAGTGATTATA
ACTGCAAAGCTATTGTATACTCTATCAATGTCAATCTCCAACTGACATCTCATGCAAAGCTGTG
CCCCACCTCCAGCTGCTATCACCCTGTAATGATTTATTCTCAAAGCACTGCGAATTACCATTTG
TATCTGTCCATCAGAGTGTTCTCTTTTGTTATTGGGGTTGAGCATTTTTCTGGTTCATTTTCTT
GTGCTACCTTTTTTGGCTGAGACTTCAACAAAGTGTTCAGGGGTTGGATGGATAGCTGAGCTTT
TGATGCAACCTATCATCTATTTGGATCTACTGCTGTTTGGATACATGTTGGGAAAACTAGGTTA
TTTGGAGGAGCAAAAAGCCAAATGTAGTAGCAAGGACCAGTGCTGAGGCTGAGTATAGGGCAAT
GACCCAAGGTGTTTGTATGATTTTATGACTTAAAAGGATTCTAGAAGAGTTCCAGCTTCCTATA
ACTTTTCCAATGAAGCTGAATTGTGATAACAAGGCTGCAATTAGTATCTCCTAGAACCCTGTTA
AACATAACCAAACCAAGCATATTGAAATTGATAGACATTTTATAAAGGAAAAGGTGGATGCCGA
CTTGATTTGCATGCCCTTTGTTCCTACTTCACAGCAAGTTGTTGACATTCTTACAAAAGGATAT
TTAGGCCCAACTTTGAGTTTCTTGTAAGCAAGTTGGGCATGCTCGACATCTATGCACCAACTTG
AGTGGGGTGTCAACAGCTGTATGCTTGTTTTTGAATTAGTATTCTAGAAGATTGAATAATTAAG
ATCAAGATCAGATTATTCTAATTGATCTGATTCGGATATTATTTTGGGTCAAAATCAAATCTCT
CTGATTTGATCTGATCCCCCTTTTATTTACTTTCCATTCTGCATTTATACGTAATTAGAGACAA
CCCAACCTAAATTAATATACAAGAAGTATTCTTCCTCCCATATAGTTATTTTTTTCCCTATCAG
TCCCTAAAACAACACACACTATTTATCTTTCTCATTTCTTCAATACGTCCTATATGACTATATA
TGCTAGATAACTGAAACTTAGGATTCCTTCATACCAAACAATCTTCAAGGAAATCGTCTCAATT
TACTACAGTGATCACTTCTCTCGTTACTCATTATATCTATCAAAATATGTGAACACACATGCAA
ATGAATGATTAAACAAGTACATACATACATACATACATACATATATATATATATATATATATAT
ATATATATATATATATATATATCATGTTTGTGCCAGTGCAAATAGTTTCAATCCAATAAATTTT
TAACAAATTAGGTTTTGCAATTATTGAGGGCCCTTCTACCTATACAGTAATTCTTAATAAATAA
TAAGAAAAATATATTATTTGGTTTAGGGAATTTCATAGATTTATGAAATCAGCTACTATAGTAT
TACTAAATAGTAAATAGTGAAAAAAATGGAAATATTATGTTTGTCCGTGTTCGAAATATAAAGT
ACATTATACAAGCCAGAAGATGGTTAAAAATAATTCCATTTTAAAGTACTATTTCATACATAGA
GGGAAAGAAAATATGAATGCTCAACTATGCTCCACGTGTTGTGGAAGCATGCCACACAAATGGC
TTTCAATTACCATGGCACACAGCGAAATTTACTGCATATGTTTAACTAAATTCATCCTACCTTT
GGATGAACTGCTAATGCCACATCACCAAATAAAGTCTCCGGTCGTGTAGTAGCCACAGTCAAGA
AATCACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.014434765
Functional Information
Coding potential Y
Potential coding position 23829458-23832282(-)
Potential amino acid sequence MMAIVPQTFGRHVPIIADKHVDREFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNDV
AGLYSGLDRFEARKKLWAELEETRLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK
ALQAVEKGELTIIPERFQKE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2018