Detail information of Csa3G653430_circ_g.2


General Information
CircRNA Name Csa3G653430_circ_g.2
ID in PlantcircBase csa_circ_001880
Alias Chr3:25775561_25778180
Organism Cucumis sativus
Position chrChr3: 25775561-25778180  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method Find_circ
Parent gene Csa3G653430
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa3G653430_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa3G653430.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGAAGGAATGATAGAGACTTTATCTAGAACTAAAGAAAGCATAGGACGTGCAACTCGGTTG
GCTATTGATTGTGCCAGATATGGAATTGCCAACGAGagcttttgtagcccctggtgatattcag
gccttcactattgtggaaaaaaataaattatcagctcgttgccaaggtaaaacaactcaatttg
ctcaggct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCTTTTGTAGCCCCTGGTGATATTCAGGCCTTCACTATTGTGGAAAAAAATAAATTATCAGCT
CGTTGCCAAGGTAAAACAACTCAATTTGCTCAGGCTGTGAGGGAAATATGTTCAGCGTTTGATG
AAAAACAAAATGAGAAAACTAGTGGTATGAGAGTTGATATGGAAAGATTGGAAACTGAAAGTGG
TGCTCCCTGCACTGATGAGGTTGTGGACAATGAGTTAGATGTTGACTTGAAGGATGAAGAAGTG
GGTCCTGCAGAATCAAACGACGATGCTGTAAATGAAGGCATAGGTGACTATAGCTCTAGACTTG
GGCGTTGCTCACAAAAAAGAGGTGAAACCAATGTTCAAGACATCAAGTCTTCTGTAGAACCGCA
TCAGTCAGATGATTCATCTTCAGGAATTTCTTCTGAGCAGAAGGACAATATATTAGATATTGCA
CCAAAGAGTGAAGCAGTGACATTTGAATCGGATAAAAGTATTTCTCAAACAGAAAAGCCTTCAG
AACTTCAGAATATACCTACAGCTAACGGTCAAAATGTCAAAAAGGAAGGGGCTAGTTCGAAGAA
GAAACAAGAGGCTGCTGCTAAACACCAGAAGAGCAAAGGCTCTACTGTCACAGCATCTAAGAGC
GAAGTTCCTGATAATCGTCCCAATCTTCCAGAATCTGTTGTGGATTCAAATTCGAAGGGTGGAA
AGAAAGGCAAATTTACTTCTGGTGGAGGTACGAGGGAACACGGTCCTAGAACTCTTAAACCAAA
TTCTGAGTCTGGTCATGGGAAGAAGACTAAAGACCTGCCAAGGGATAAAAAGCATTTTAAGGGT
AAAGATGATGTGGCAGACACCAAACAGAGTCCTAAGGAACAGGGACAGGGCAAAAGCAAAGCTA
GTGCTGGAAAGATGCCTCTGGTTGGACAAGGAAAATCTGATTTGGGATCAAGTGAAAGTTTGCG
TCCTGCCAAAAAGTTGAAACGAGGAGACATAGGGGAGAGTAAGGGATCACTCAGCAACAACATA
AAGGTTGCCTCTTCTCCTAAACCTGTTGTGGCTGATGAAAAAGTGGTTAAAAAATCTGAGTTAA
AAAAGTTAACTCCCGGTCTTAAATCAGAGAACCTTTTAAAATCTAGTCACCATTCAGATTCTGT
TAACTCTGCAGCTGGTGATGAAACTGTGTTGCCTTTGACAAAGCGACATCGTCGAGCTCTCGAA
GCTATGTCTGATACCACAACTACCGTTCACAATGCTAAAAATGAAAAGAGTTCGTTTTCACAGA
GGTATGATGCTTCATGTTCTAGTAGTGATAGACTATTGGCAAATCATTCAAATAGAAAAAGGAG
GGCAGTTTGCATTTTTGACGACGACGATGAAGATCCTAAGACTCCTGTTCATGGATCTTCTCGG
AATATTGATGCAACTTTAAATGGTCCAGATGTTAGTAAGAATAATGATGATCATAATCAAAGTC
CTCCTACTTCTCCTTTGACTGTTAATGGAACTAATGGATCAGAGCATGACCGTTCTAAGGAATC
AACTAGCCAGGCGCAGAGGTTGTCTTCATCTCCTAAAGAACCCCAAACTGAAGAATTCCAGCAA
GAAAAACCAGAGGCTGTTGATACCTCTGAAAGTCCTTCAAAATCAGGATCTGAGCAGCTGTTAC
CTAAGGATGGAAAACCAAATTTTATTTCCCCAAAAAAGTCTCCTTCATTAGCTAATAATAGCAC
TACAGCTTTGGAAAGGAAAAAGTCTCCTTTGTTAACCAATAGCGCTACATCCCTGGAACAAACG
AAGACTGTGAAACCTCCAATCAAAGCCTCTAATACTGGTGTCCAGAAACAATCCCAGGGGGGGT
CTGCTAAGTCCATGGTTTTGCCTTCAAGTTCCAGCTCTTCTCAGAAGTTATCTGTCCTCCAAAA
AAGTAGGTCACATTCTTCTGGAGAGAAGTCTAAAACTACTCCAAAATCACGTGCCAATGACTCT
ACAACTATGGGGGGAAGTTCTATGGATCATGATGATCTTCATGGTGAAAGGTATTAATGTTTGC
CATTTAATTATTTTCTTTCTTCCTCTTATTTTTTCCTTAAATAGAGTCCAAGCTTAACTTTTTT
TTTTTAATAATTAAAAAATAGAAGCTTGGTCAGTGAATTTAAGGTCACGGAATCTGCCCTGTCC
ATGAAGCATCTAATTGCAGCTGCTCAAGCTAAAAGAAGGGAGGCTCATTCACACAATGTCCTTG
GATTTTTTAGTTCTGGTATTTTATCCTCTGATGTCCATGGTAGTCCTAGTCCTACTCCAGTCCA
GACGCATTTATCTAGTACCACCCATTTGATGCTGGCAGACTTGAAGGGATCTTTTCATCAAAAA
GAGGTGGCTTCTCCATCAACTCTAGGACATCAATTAGCGTCACAAAATCACAATGACGTTGAAG
AAATAGAGGAGAAAAGAGTCAGTTCAGTACACAGATCTGTTGGAGATTCATTGAGTGGTGGCAC
TGAGGCAGCTGTTGCACGAGATGCTTTTGAAGGAATGATAGAGACTTTATCTAGAACTAAAGAA
AGCATAGGACGTGCAACTCGGTTGGCTATTGATTGTGCCAGATATGGAATTGCCAACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.109070048
Functional Information
Coding potential Y
Potential coding position 25775716-25775578(+)
25778165-25775578(+)
Potential amino acid sequence MRVDMERLETESGAPCTDEVVDNELDVDLKDEEVGPAESNDDAVNEGIGDYSSRLGRCSQKRGE
TNVQDIKSSVEPHQSDDSSSGISSEQKDNILDIAPKSEAVTFESDKSISQTEKPSELQNIPTAN
GQNVKKEGASSKKKQEAAAKHQKSKGSTVTASKSEVPDNRPNLPESVVDSNSKGGKKGKFTSGG
GTREHGPRTLKPNSESGHGKKTKDLPRDKKHFKGKDDVADTKQSPKEQGQGKSKASAGKMPLVG
QGKSDLGSSESLRPAKKLKRGDIGESKGSLSNNIKVASSPKPVVADEKVVKKSELKKLTPGLKS
ENLLKSSHHSDSVNSAAGDETVLPLTKRHRRALEAMSDTTTTVHNAKNEKSSFSQRYDASCSSS
DRLLANHSNRKRRAVCIFDDDDEDPKTPVHGSSRNIDATLNGPDVSKNNDDHNQSPPTSPLTVN
GTNGSEHDRSKESTSQAQRLSSSPKEPQTEEFQQEKPEAVDTSESPSKSGSEQLLPKDGKPNFI
SPKKSPSLANNSTTALERKKSPLLTNSATSLEQTKTVKPPIKASNTGVQKQSQGGSAKSMVLPS
SSSSSQKLSVLQKSRSHSSGEKSKTTPKSRANDSTTMGGSSMDHDDLHGERSLVSEFKVTESAL
SMKHLIAAAQAKRREAHSHNVLGFFSSGILSSDVHGSPSPTPVQTHLSSTTHLMLADLKGSFHQ
KEVASPSTLGHQLASQNHNDVEEIEEKRVSSVHRSVGDSLSGGTEAAVARDAFEGMIETLSRTK
ESIGRATRLAIDCARYGIANESFCSPW*
MELPTRAFVAPGDIQAFTIVEKNKLSARCQGKTTQFAQAVREICSAFDEKQNEKTSGMRVDMER
LETESGAPCTDEVVDNELDVDLKDEEVGPAESNDDAVNEGIGDYSSRLGRCSQKRGETNVQDIK
SSVEPHQSDDSSSGISSEQKDNILDIAPKSEAVTFESDKSISQTEKPSELQNIPTANGQNVKKE
GASSKKKQEAAAKHQKSKGSTVTASKSEVPDNRPNLPESVVDSNSKGGKKGKFTSGGGTREHGP
RTLKPNSESGHGKKTKDLPRDKKHFKGKDDVADTKQSPKEQGQGKSKASAGKMPLVGQGKSDLG
SSESLRPAKKLKRGDIGESKGSLSNNIKVASSPKPVVADEKVVKKSELKKLTPGLKSENLLKSS
HHSDSVNSAAGDETVLPLTKRHRRALEAMSDTTTTVHNAKNEKSSFSQRYDASCSSSDRLLANH
SNRKRRAVCIFDDDDEDPKTPVHGSSRNIDATLNGPDVSKNNDDHNQSPPTSPLTVNGTNGSEH
DRSKESTSQAQRLSSSPKEPQTEEFQQEKPEAVDTSESPSKSGSEQLLPKDGKPNFISPKKSPS
LANNSTTALERKKSPLLTNSATSLEQTKTVKPPIKASNTGVQKQSQGGSAKSMVLPSSSSSSQK
LSVLQKSRSHSSGEKSKTTPKSRANDSTTMGGSSMDHDDLHGERSLVSEFKVTESALSMKHLIA
AAQAKRREAHSHNVLGFFSSGILSSDVHGSPSPTPVQTHLSSTTHLMLADLKGSFHQKEVASPS
TLGHQLASQNHNDVEEIEEKRVSSVHRSVGDSLSGGTEAAVARDAFEGMIETLSRTKESIGRAT
RLAIDCARYGIANESFCSPW*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References He et al., 2020