Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G27640_circ_g.1 |
ID in PlantcircBase | ath_circ_033167 |
Alias | At_ciR3027, Ath_circ_FC2839, AT4G27640_C2 |
Organism | Arabidpsis thaliana |
Position | chr4: 13798788-13800094 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2 |
Parent gene | AT4G27640 |
Parent gene annotation |
ARM repeat superfamily protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2/9/3 |
Tissues | leaf/root, aerial, inflorescences, seed, whole_plant/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT4G27640.1:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.522957744 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13800070-13798790(-) |
Potential amino acid sequence |
MDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMTDDDDKEV VAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGHDEVLMDA VSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLPISSYVDR LMPLVLKELGSPEATNRRNAAFCVGELCKNGGETALNYLEESLKIMDKHSAYFHEDVRLQAVTG LKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMTDDDDKEVVAQACISVADIMKDYGYPA IQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPV FAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRN AAFCVGELCKNGGETALNYLEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGT GKANEILDTVMNNYIKTMTDDDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEK AACQQLEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQ DRTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETALNY LEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMT DDDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGH DEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLP ISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETAL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress; responsive to methyl jasmonate |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019 |