Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | AT4G27640_circ_g.1 |
| ID in PlantcircBase | ath_circ_033167 |
| Alias | At_ciR3027, Ath_circ_FC2839, AT4G27640_C2 |
| Organism | Arabidpsis thaliana |
| Position | chr4: 13798788-13800094 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2 |
| Parent gene | AT4G27640 |
| Parent gene annotation |
ARM repeat superfamily protein |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 2/9/3 |
| Tissues | leaf/root, aerial, inflorescences, seed, whole_plant/seedlings |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | AT4G27640.1:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.522957744 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
13800070-13798790(-) |
| Potential amino acid sequence |
MDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMTDDDDKEV VAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGHDEVLMDA VSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLPISSYVDR LMPLVLKELGSPEATNRRNAAFCVGELCKNGGETALNYLEESLKIMDKHSAYFHEDVRLQAVTG LKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMTDDDDKEVVAQACISVADIMKDYGYPA IQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPV FAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRN AAFCVGELCKNGGETALNYLEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGT GKANEILDTVMNNYIKTMTDDDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEK AACQQLEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQ DRTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETALNY LEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMT DDDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGH DEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLP ISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETAL(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | response to drought stress; responsive to methyl jasmonate |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Liu et al., 2017;Zhang et al., 2019 |