Detail information of AT4G27640_circ_g.1


General Information
CircRNA Name AT4G27640_circ_g.1
ID in PlantcircBase ath_circ_033167
Alias At_ciR3027, Ath_circ_FC2839, AT4G27640_C2
Organism Arabidpsis thaliana
Position chr4: 13798788-13800094  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, CIRI, KNIFE, MapSplice, PcircRNA_finder, circRNA_finder, find_circ, CIRI-full, CIRI2
Parent gene AT4G27640
Parent gene annotation ARM repeat superfamily protein
Parent gene strand -
Alternative splicing NA
Support reads 2/9/3
Tissues leaf/root, aerial, inflorescences, seed, whole_plant/seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G27640.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAAACTCACGTTTCAAACCAGTAACTGCTTGAAGCCGAACATCTTCATGAAAATATGCAGAA
TGTTTGTCCATAATCTTCAATGATTCCTCGAGGTAGttaagagcagtttcacccccgtttttgc
atagctctccaacacagaaagctgcattccttctattggttgcttctggtgaccccaactcttt
gagcacca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 136
Transcript exons: 13798788-13798892,13800064-13800094
TTAAGAGCAGTTTCACCCCCGTTTTTGCATAGCTCTCCAACACAGAAAGCTGCATTCCTTCTAT
TGGTTGCTTCTGGTGACCCCAACTCTTTGAGCACCAAAGGCGTCCATAATCTTCAATGATTCCT
CGAGGTAG

Transcript length: 158
Transcript exons: 13798788-13798899,13800049-13800094
TTAAGAGCAGTTTCACCCCCGTTTTTGCATAGCTCTCCAACACAGAAAGCTGCATTCCTTCTAT
TGGTTGCTTCTGGTGACCCCAACTCTTTGAGCACCAAAGGCATTAATCATATGCAGAATGTTTG
TCCATAATCTTCAATGATTCCTCGAGGTAG

Transcript length: 169
Transcript exons: 13798788-13798882,13800021-13800094
TTAAGAGCAGTTTCACCCCCGTTTTTGCATAGCTCTCCAACACAGAAAGCTGCATTCCTTCTAT
TGGTTGCTTCTGGTGACCCCAACTCTTTGAGCTGCTTGAAGCCGAACATCTTCATGAAAATATG
CAGAATGTTTGTCCATAATCTTCAATGATTCCTCGAGGTAG

Transcript length: 711
Transcript exons: 13798788-13798900,13798981-13799076,13799163-13799380,13
799479-13799601,13799680-13799710,13799804-13799844,1380
0006-13800094
TTAAGAGCAGTTTCACCCCCGTTTTTGCATAGCTCTCCAACACAGAAAGCTGCATTCCTTCTAT
TGGTTGCTTCTGGTGACCCCAACTCTTTGAGCACCAAAGGCATTAATCTATCAACATAGGAAGA
GATTGGAAGACCCATGTCTTGAGCAACCTCAGCAAGACTAGCAACTACCATTGTCCTATCCTGT
GGAGGACGTGAAGCTTTCGCAAATTTCATCAACGGCTCAAAGAATTGGGCAAAGACAGGTTCAA
ATTGAGAACCCATACACTTTGCAAAGGCGGGAAGGAGGTCAGAAACTGCATCCATGAGGACCTC
ATCATGTCCAGTATCATCATCATCAATATCACTCTCATCTTCTAACTGCTGGCAAGCTGCTTTT
TCCGTCAGCAGTAGCAATGTCGCATCAACAAGGGGTGATAAATACTTTTGAATGGCTGGGTAAC
CATAATCCTTCATGATATCGGCAACACTGATGCAAGCCTGAGCAACAACCTCCTTGTCGTCATC
ATCAGTCATAGTTTTGATATAATTATTCATAACTGTATCAAGAATTTCATTTGCCTTTCCAGTT
CCATCATTATGAGTCTGGAAGATAGCATGAGCTGCAGCCAATATATGTTTCAAACCAGTAACTG
CTTGAAGCCGAACATCTTCATGAAAATATGCAGAATGTTTGTCCATAATCTTCAATGATTCCTC
GAGGTAG

Transcript length: 863
Transcript exons: 13798788-13800094
TTAAGAGCAGTTTCACCCCCGTTTTTGCATAGCTCTCCAACACAGAAAGCTGCATTCCTTCTAT
TGGTTGCTTCTGGTGACCCCAACTCTTTGAGCACCAAAGGCATTAATCTATCAACATAGGAAGA
GATTGGAAGACCCATGTCTTGAGCAACCTCAGCAAGACTAGCAACTACCATTGTCCTATCCTGT
GGAGGACGTGAAGCTTTACTTTTGAATGGCTGGGTAACCATAATCCTTCATGATATCGGCAACA
CTGATGCAAGCCTGAGCAACAACCTCCTTGTCGTCATCATCAGTCATAGTTTTGATATAATTAT
TCATAACTGTATCAAGAATTTCATTTGCCTTTCCAGTTCCATCATTATGAGTCTGGAAGATAGC
ATGAGCTGCAGCCAATATATGTTTCAAACCAGTAACTGCTTGAAGCCGAACATCTTCATGAAAA
TATGCAGAATGTTTGTCCATAATCTTCAATGATTCCTCGAGGTAGTTAAGAGCAGTTTCACCCC
CGTTTTTGCATAGCTCTCCAACACAGAAAGCTGCATTCCTTCTATTGGTTGCTTCTGGTGACCC
CAACTCTTTGAGCACCAAAGGCATTAATCTATCAACATAGGAAGAGATTGGAAGACCCATGTCT
TGAGCAACCTCAGCAAGACTAGCAACTACCATTGTCCTATCCTGTGGAGGACGTGAAGCTTTCA
AGAATTTCATTTGCCTTTCCAGTTCCATCATTATGAGTCTGGAAGATAGCATGAGCTGCAGCCA
ATATATGTTTCAAACCAGTAACTGCTTGAAGCCGAACATCTTCATGAAAATATGCAGAATGTTT
GTCCATAATCTTCAATGATTCCTCGAGGTAG

Genomic sequence TTAAGAGCAGTTTCACCCCCGTTTTTGCATAGCTCTCCAACACAGAAAGCTGCATTCCTTCTAT
TGGTTGCTTCTGGTGACCCCAACTCTTTGAGCACCAAAGGCATTAATCTCTGCAAGAGAATTAC
CCCCAATAGTTGGTTTAATAAGGCTCAAACACCAATCATAGAGAACATCAGATGAGGAAACGTA
CATCAACATAGGAAGAGATTGGAAGACCCATGTCTTGAGCAACCTCAGCAAGACTAGCAACTAC
CATTGTCCTATCCTGTGGAGGACGTGAAGCTTTCTACAGACACAAGAAGTGAAACAGTAAGTGC
CTAAGTTTCAATGGAAGAAGATATGTCAATGAATACTTTATTCACTAATACCCACCGCAAATTT
CATCAACGGCTCAAAGAATTGGGCAAAGACAGGTTCAAATTGAGAACCCATACACTTTGCAAAG
GCGGGAAGGAGGTCAGAAACTGCATCCATGAGGACCTCATCATGTCCAGTATCATCATCATCAA
TATCACTCTCATCTTCTAACTGCTGGCAAGCTGCTTTTTCCGTCAGCAGTAGCAATGTCGCATC
AACAAGGGGTGATAAATCTAGAACCATTGTCAGCATATGATACATGAGTAAGGATCATTTAAAT
ATCCTGAAAATAATTTACATCAAATTGACTCCAACAAGAATAGATACCCACACTTTTGAATGGC
TGGGTAACCATAATCCTTCATGATATCGGCAACACTGATGCAAGCCTGAGCAACAACCTCCTTG
TCGTCATCATCAGTCATAGTTTTGATATAATTATTCATAACTGTATCTGCGATGGACAAAAACG
GTTTCAATATCTTCCCGTCATTCTTGTGTTAATGAGAAAAAATGCTGTGTTATGTGTTACCAAG
AATTTCATTTGCCTTTCCAGTTCCATCCTACAAAAGAGCCAAACATTAGGAAAAAGGAAACTAC
CATGGCTGGAAATTAGATAGGATTGAGATTCGATATATGCATGATCAAGTTCTTACATTATGAG
TCTGGAAGATAGCATGAGCTGCAGCCAATATATCTGCAATTCAAATTAGAATGACAAGCTGTAA
TGCCACAATCATTATCAAGTCTAACCCATAGATTAGGTAAGCTTTTAAATACTAACATAGTTCC
CACCCAGTATAAACAATGACAATTAATGGAACAGAATATTGAATAATCAATAGATTGAAAACTC
ACGTTTCAAACCAGTAACTGCTTGAAGCCGAACATCTTCATGAAAATATGCAGAATGTTTGTCC
ATAATCTTCAATGATTCCTCGAGGTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.522957744
Functional Information
Coding potential Y
Potential coding position 13800070-13798790(-)
Potential amino acid sequence MDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMTDDDDKEV
VAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGHDEVLMDA
VSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLPISSYVDR
LMPLVLKELGSPEATNRRNAAFCVGELCKNGGETALNYLEESLKIMDKHSAYFHEDVRLQAVTG
LKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMTDDDDKEVVAQACISVADIMKDYGYPA
IQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPV
FAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRN
AAFCVGELCKNGGETALNYLEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGT
GKANEILDTVMNNYIKTMTDDDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEK
AACQQLEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQ
DRTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETALNY
LEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGTGKANEILDTVMNNYIKTMT
DDDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKAACQQLEDESDIDDDDTGH
DEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQDRTMVVASLAEVAQDMGLP
ISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETAL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description response to drought stress; responsive to methyl jasmonate