Plant Circular RNA Database

Detail information of

			
						 General Information
					
						CircRNA Name
						
						ID in PlantcircBase
						
						Alias
						
						Organism
						
						Position
						
							chr: -  JBrowse»						
					
						Reference genome
						
						Type  
						
						Identification method
						
						Parent gene
						
						Parent gene annotation
						
						Parent gene strand
						
						Alternative splicing
						
							NA						
					
						Support reads
						
						Tissues
						
						Exon boundary  
						"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered

General Information
CircRNA Name
ID in PlantcircBase
Alias
Organism
Position	chr: - JBrowse»
Reference genome
Type
Identification method
Parent gene
Parent gene annotation
Parent gene strand
Alternative splicing	NA
Support reads
Tissues
Exon boundary	"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
						Assembled circRNA sequence  
						The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 
Transcript exons: 						
					
						Genomic sequence

Sequences
Splice junction sequence
Assembled circRNA sequence	The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: Transcript exons:
Genomic sequence

			
						 Conservation Information
					
						Conserved circRNAs
						
						PMCS

Conservation Information
Conserved circRNAs
PMCS

			
						 Functional Information
					
						Coding potential
						
						Potential coding position
						
						Potential amino acid sequence
						
						Sponge-miRNAs
						
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description

Functional Information
Coding potential
Potential coding position
Potential amino acid sequence
Sponge-miRNAs
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description

			
						 Other Information
					
						References

circRNA

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