Detail information of orai.004G207300_circ_g.1


General Information
CircRNA Name orai.004G207300_circ_g.1
ID in PlantcircBase gra_circ_000386
Alias Chr04:53815453|53817950
Organism Gossypium raimondii
Position chrChr04: 53815453-53817950  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.004G207300
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.004G207300.2:7
Gorai.004G207300.3:7
Gorai.004G207300.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATACTCCTGACCGTGCCTTCTCCTTACAAGTTTACCAGATAAAAATAGTGACATAGTCTGGTC
AGCATTGCTTCTTTTAGAACCACACTCAAGGACCCTcttcatagaatagactatatcaaactgt
ccaccagtcccaatacgaggaacccttccccaagccaataggtcaatggtcccttgaagattat
ccgcaact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1071
Transcript exons: 53815453-53815590,53815691-53815864,53815964-53816223,53
816758-53816900,53817401-53817519,53817601-53817667,5381
7781-53817950
CTTCATAGAATAGACTATATCAAACTGTCCACCAGTCCCAATACGAGGAACCCTTCCCCAAGCC
AATAGGTCAATGGTCCCTTGAAGATTATCCGCAACTCCAGTCTTTGCAGCTTTGACAAAGCAAG
CACTAGGGTTTGAAAAGCATGCTTGCATGAAAGGAGAAGAGACAAATGCATGTTCTCTTTGTTG
TTTCAAGCCTTTTGAATTTAAACCAACAAACTCCCCGGTAGCTGACAGACAATTGGCAGCAAGG
TGTAGATGTTCATTTAGTATAGACTTGCCAGTATCTGATATTGCACTCTTCATATTATTGAGAA
AGAATCTCCATCCAGCATCTATTCCGAATGCCAAGCAAAACTGATTAATGTTATCTGGATGGCT
CCGTGTCCAATCGATTATATCCATTAGTTGGAGGCAATCATTCATAAGCACACTCCAGAGTTTC
GTTATACCAAAATCGCCAGATACAGAAACCCTCAAGTAAAGTTCACCAGGAGCAGGTTTATGAG
AATTTGGGACTCTGAAATCCTCATTCCATAGAATTTCCACCTTCTTGATCTCCGGGAATCCTTT
TACCACTGCTTCCAGAAGGGAAGGTATCACCATGTCTTGAATCACATCCAGTTCTATACGAGAA
GTTTTACATTCAACAATTGTGACAGTGATACAAAACGTATCATCTTCATTTTCCATGTCAATAA
CAGAACAGGCCTTGCTTGTAACTTGCATGTCGGGCAAATTGATTTTCCATAGTCTTTTGGCATT
GGTGCAGTGCATGTGAAGAGCATCAATAATAGAATGCACTGTTAGCCGCCTCCTTGTCACAATA
TCCTTAAACACATGAAAATGGCAAACCCAAGGACTGAAACGGTTTTCACTAGACATCTGTGGAG
AGAAGATTATTGAGACAGTAGACACAATATCTTTAAAGATCAGCCTCTCCAAATGATTCTTGAC
TTCTAAGGCTCCATACTCCTGACCGTGCCTTCTCCTTACAAGTTTACCAGATAAAAATAGTGAC
ATAGTCTGGTCAGCATTGCTTCTTTTAGAACCACACTCAAGGACCCT

Genomic sequence CTTCATAGAATAGACTATATCAAACTGTCCACCAGTCCCAATACGAGGAACCCTTCCCCAAGCC
AATAGGTCAATGGTCCCTTGAAGATTATCCGCAACTCCAGTCTTTGCAGCTTTGACAAAGCAAG
CACTAGGGTTCTGCCACAAATTGTATAAAGCTAAGTTGACTATAAAAATGACAGCTACTTAAAC
ATTTTATATTAAGAGCATCAAAGGGGAAACAATGACAAGAACTAACTGAAAAGCATGCTTGCAT
GAAAGGAGAAGAGACAAATGCATGTTCTCTTTGTTGTTTCAAGCCTTTTGAATTTAAACCAACA
AACTCCCCGGTAGCTGACAGACAATTGGCAGCAAGGTGTAGATGTTCATTTAGTATAGACTTGC
CAGTATCTGATATTGCACTCTTCATATTCTGCATAGAGAAACGCATGAGCAGGTTAATATATGC
AGTTACCCTTAAGCTTTTGTGCAAGTAGAAAACAGGGAATAAATTATAACAAGGATAACAAACA
TTGAGAAAGAATCTCCATCCAGCATCTATTCCGAATGCCAAGCAAAACTGATTAATGTTATCTG
GATGGCTCCGTGTCCAATCGATTATATCCATTAGTTGGAGGCAATCATTCATAAGCACACTCCA
GAGTTTCGTTATACCAAAATCGCCAGATACAGAAACCCTCAAGTAAAGTTCACCAGGAGCAGGT
TTATGAGAATTTGGGACTCTGAAATCCTCATTCCATAGAATTTCCACCTTCTTGATCTCCGGGA
ATCCTAAAGAAAATTTCAAAAATTTGAAGGCAGAAACAGATGAATATTACCAACTTGTAATCAA
CTTGTAATGCATATCTACAAAGATGCATGTCACATCTTTTAGGCCATTTGATATTTCTGGTGGT
TTAAATATTGCCTTTTACATTTGACCAGACCCTACTAAAGATTCTGCTTTTCCTACCAGAAATT
TGGTCATACAATGATACAAGTTCAAATATCAGAACTTCCTCCAATAAACAGACGTAATCAAAAT
AGGGAATTAACAGTTATAGGTAAAAGATAAGAAATGCACACTGAGGGAAGGCGTAACCTTCAAT
ATTTTCAAAAACAGAGTGATAGAAATAGTCTACCAGCAATTCACATGGCAAATTTAGATTCCAA
CACTATATTCTCAATCTTGACGGTAGTTGTTCAAAGACCCATAATAAAGGTCTAAGCCATTTCA
CCAAATCAGCCCTCAAATGGGATTCCTAACACTAGTCAATTTGCTCCTTCAAAAAAAAAATACT
AGTCAATTTGGATGCAAGTACATACCTTTTACCACTGCTTCCAGAAGGGAAGGTATCACCATGT
CTTGAATCACATCCAGTTCTATACGAGAAGTTTTACATTCAACAATTGTGACAGTGATACAAAA
CGTATCATCTTCATTTTCCATGTCAATAACAGAACAGGCCCTGTCATTCAATCAAACAAATAAG
AAGCAAAATAAAGCTCTAGGAAGTAAACAATAATGCTAGCAGATTCAATTACAGCGACCATTTT
CCACCCTTCAGAATTCAAATGCATTGGAACAACTACCATCTGGAAGCATATTATTGAAAATTTG
AAGCCCTCAAATGAAATAATTAAATTGAATTTATGCTGATTATAGTTTTTCATGCATCTAACCA
TACAACTTTGAGACAGGCTGAGATTAGATTGACAAGGACCACAAAAATCAAGGCATAAACTTGG
GTGCAAGCCATGAAAACAAAAGATTGAAGCCCTATTTCTGCATCAGAAAGTGATAATACATGTA
CAAAGATATAGGTCATGATCTTAATATTGACAGAAAAAGCACAAATTTGGGGTCTTCAAGATTT
CTTTCAACAGGGACTAGAGGGAAAAGAGCAATACATATTACCAGTGCCTCCTTTTTGCAACATC
TACACATGCTAAAAAGGGGCAAACTTACTTGCTTGTAACTTGCATGTCGGGCAAATTGATTTTC
CATAGTCTTTTGGCATTGGTGCAGTGCATGTGAAGAGCATCAATAATAGAATGCACTGTTAGCC
GCCTCCTTGTCACAATATCCTGGAAAGTAAATAATTTTGATGTGAAACTTTGAAGTGGAAATCT
TATCAACATAGATACACCACTTGCGTATCACAGTACCTTAAACACATGAAAATGGCAAACCCAA
GGACTGAAACGGTTTTCACTAGACATCTGTGGAGAGAAGCTAGTGCCATATAACACATTAATAA
ATCTCAAATAAAAAAGCATCAAAGTAATGGGAAAAATAAATCACAAAACGAGAAAGGACAAGAC
AATGAGAAAGGAACTTAAACTCACATTATTGAGACAGTAGACACAATATCTTTAAAGATCAGCC
TCTCCAAATGATTCTTGACTTCTAAGGCTCCATACTCCTGACCGTGCCTTCTCCTTACAAGTTT
ACCAGATAAAAATAGTGACATAGTCTGGTCAGCATTGCTTCTTTTAGAACCACACTCAAGGACC
CT
Conservation Information
Conserved circRNAs NA
PMCS 0.759175157
Functional Information
Coding potential Y
Potential coding position 53817906-53815455(-)
Potential amino acid sequence MSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVFK
DIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDTFCITVTIVECK
TSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYLRVSVSGDFGI
TKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSAISDTGKSILNEHL
HLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDL
LAWGRVPRIGTGGQFDIVYSMKRVLECGSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHL
ERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRL
WKINLPDMQVTSKACSVIDMENEDDTFCITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPE
IKKVEILWNEDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDN
INQFCLAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREH
AFVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKRVLEC
GSKRSNADQTMSLFLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFS
PWVCHFHVFKDIVTRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDTF
CITVTIVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYL
RVSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSAISD
TGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACFVKAAKTGV
ADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKRVLECGSKRSNADQTMSLFLSGKLVRRRHGQE
YGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVFKDIVTRRRLTVHSIIDAL
HMHCTNAKRLWKINLPDMQVTSKACSVIDMENEDDTFCITVTIVECKTSRIELDVIQDMVIPSL
LEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYLRVSVSGDFGITKLWSVLMNDCLQLMDI
IDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSAISDTGKSILNEHLHLAANCLSATGEFVGLN
SKGLKQQREHAFVSSPFMQACFSNPSACFVKAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDI
VYSMK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b