Detail information of AT2G05510_circ_g.8


General Information
CircRNA Name AT2G05510_circ_g.8
ID in PlantcircBase ath_circ_012877
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2016355-2016393  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G05510
Parent gene annotation At2g05510
Parent gene strand +
Alternative splicing 2_circ_ag.3 AT2G05380_circ_g.4 AT2G05440_circ_g.1 2_circ_ag.2 2_circ_ag.3 AT2G05440_circ_g.4 AT2G05440_circ_g.5 AT2G05440_circ_g.6 AT2G05440_circ_g.7 AT2G05440_circ_g.8 AT2G05440_circ_g.9 AT2G05440_circ_g.10 AT2G05440_circ_g.11 AT2G05440_circ_g.12 AT2G05440_circ_g.13 AT2G05440_circ_g.14 AT2G05440_circ_g.15 AT2G05440_circ_g.16 AT2G05440_circ_g.17 AT2G05440_circ_g.18 AT2G05440_circ_g.19 AT2G05510_circ_g.1 AT2G05510_circ_g.2 AT2G05510_circ_g.3 AT2G05510_circ_g.4 AT2G05510_circ_g.5 AT2G05510_circ_g.6 AT2G05510_circ_g.7 AT2G05510_circ_g.9 AT2G05510_circ_g.10 AT2G05510_circ_g.11 AT2G05520_circ_g.1 AT2G05520_circ_g.2 AT2G05520_circ_g.3 AT2G05520_circ_g.4 AT2G05520_circ_g.5
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   AC-GG
Number of exons covered AT2G05510.4:1
AT2G05510.6:1
AT2G05510.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGGAGGACATGGAGGACgccacggacttgacggatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCACGGACTTGACGGATACGGAGGAGGACATGGAGGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.083333333
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017