Detail information of Zm00001d025830_circ_g.4


General Information
CircRNA Name Zm00001d025830_circ_g.4
ID in PlantcircBase zma_circ_010330
Alias zma_circ_0000065
Organism Zea mays
Position chr10: 131200671-131202723  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d025830
Parent gene annotation dicer-like 103
Parent gene strand -
Alternative splicing Zm00001d025830_circ_g.1 Zm00001d025830_circ_g.2 Zm00001d025830_circ_g.3 Zm00001d025830_circ_g.5
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d025830_T031:6
Zm00001d025830_T055:6
Zm00001d025830_T074:5
Zm00001d025830_T032:6
Zm00001d025830_T049:6
Zm00001d025830_T025:6
Zm00001d025830_T057:6
Zm00001d025830_T066:6
Zm00001d025830_T015:6
Zm00001d025830_T070:6
Zm00001d025830_T010:6
Zm00001d025830_T050:6
Zm00001d025830_T039:6
Zm00001d025830_T001:5
Zm00001d025830_T080:4
Zm00001d025830_T024:6
Zm00001d025830_T027:6
Zm00001d025830_T077:4
Zm00001d025830_T073:6
Zm00001d025830_T078:4
Zm00001d025830_T084:5
Zm00001d025830_T046:6
Zm00001d025830_T021:6
Zm00001d025830_T016:6
Zm00001d025830_T083:6
Zm00001d025830_T037:6
Zm00001d025830_T075:4
Zm00001d025830_T019:5
Zm00001d025830_T007:6
Zm00001d025830_T068:6
Zm00001d025830_T059:6
Zm00001d025830_T058:6
Zm00001d025830_T065:6
Zm00001d025830_T069:2
Zm00001d025830_T028:6
Zm00001d025830_T008:6
Zm00001d025830_T006:3
Zm00001d025830_T013:6
Zm00001d025830_T022:6
Zm00001d025830_T076:6
Zm00001d025830_T054:6
Zm00001d025830_T056:6
Zm00001d025830_T041:6
Zm00001d025830_T079:2
Zm00001d025830_T004:6
Zm00001d025830_T020:6
Zm00001d025830_T036:6
Zm00001d025830_T063:6
Zm00001d025830_T042:6
Zm00001d025830_T012:5
Zm00001d025830_T033:6
Zm00001d025830_T011:6
Zm00001d025830_T009:1
Zm00001d025830_T061:6
Zm00001d025830_T029:6
Zm00001d025830_T023:6
Zm00001d025830_T048:6
Zm00001d025830_T071:6
Zm00001d025830_T047:6
Zm00001d025830_T062:6
Zm00001d025830_T038:6
Zm00001d025830_T043:6
Zm00001d025830_T081:6
Zm00001d025830_T002:6
Zm00001d025830_T045:4
Zm00001d025830_T072:6
Zm00001d025830_T018:3
Zm00001d025830_T060:5
Zm00001d025830_T051:6
Zm00001d025830_T067:4
Zm00001d025830_T052:6
Zm00001d025830_T040:6
Zm00001d025830_T035:4
Zm00001d025830_T034:6
Zm00001d025830_T082:6
Zm00001d025830_T064:1
Zm00001d025830_T026:6
Zm00001d025830_T003:6
Zm00001d025830_T014:6
Zm00001d025830_T044:6
Zm00001d025830_T017:6
Zm00001d025830_T005:6
Zm00001d025830_T030:6
Zm00001d025830_T053:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAAAATCAAGGCACTTCAGATTTTGGAGAATTTGAACTACTACTCTTGCGACAATGATTCTT
TTCACAAAAACAATGCACTTCATGTTTTCCTCCAACctttgtttaaaatgttctgcatacgttg
caccgttcaactcacttttagcatttgttccatccagaatggcatcaacgaagaaaaacaggtc
ggtgtggg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1524
Transcript exons: 131200671-131201092,131201178-131201452,131201533-131201
798,131201879-131202085,131202248-131202408,131202531-13
1202723
CTTTGTTTAAAATGTTCTGCATACGTTGCACCGTTCAACTCACTTTTAGCATTTGTTCCATCCA
GAATGGCATCAACGAAGAAAAACAGGTCGGTGTGGGGAGTATAGACCAAACTGCCAATCACATC
AGCTTTGTTGTATGTTCCACCAAGAAGCTTCAAAGACTCATTTGGTAAATATGAATCATGCAGA
GACAAACCCATTGGATCTTGAAATGCAGGTGATGATAAACACCGCTTTACTGCTGGCCAATCAA
TCATATTATCACCATAGAATTTCTGCTTGATGGGAAGTAAAAGGTAAAATGTTGAATCCATGTC
CAATGCACCATCATTCCCCAACAAAATATAAGATGGTGTGAACTCAGATCTATCCAGGAGAACT
TTCAAAAACATTTCTTGAAAATTGTGTGCGAGTATCATCTCTTCTTTGTTAAACTCAATCTTTC
CCAAATATTTAATTCCTGCTTTCACAATCCTCGCACGAGCAAGATGCAATTCAACATCCAACTT
TTCAGATTCCTCTGGAAGGCGATTGATCACAAAAAGACCAAACATCTGATATCGTCTATCTGCT
GGTATGGGAATAAATTCTATGTAATAGAAATGCAACTTAAACGAGGAGTCTAGTTTGCATCTTG
AAGGTCTCAGAACTGCAGGGATTAACATCTCATAAAGCTCTTCCCTAAAACTTTCATCATCGTC
TTTGTTGCTTTCTGAATTATTTGTTGTTGATACCTTAATCTTTCTAGAGCCTTGGCCAGGTAGA
AGAAAATCTGTCAAAGCACCGAGTTCATGAAGTTTGATGCATGCTTTCAAGCATGCATCTCTCT
TAGCTTCATCTTTCGATGGACAGGGTTGACCATTCACTTGACGGAAAGCAGCATTTGGTGGAAG
AATTAATTTGCATACTATTCCATCGACGTCATCAACAAAGAAGAATGATGGGGAAGGAACAAAA
AAAATATCTCTAGGAAGGTTATCACAGTAGCGATGTAATAGAGATACACTGCAAGCAGTGCTAA
TGGAAGCACCAGTATCATTGACTCGATAGATGTTCTCCTCAAGGCAATTGAACATATCATTTGA
TGTTCTCAAGTTAATCTCTTTATCCATAATGATTTCACCAGTAATATAATCATCAAGTAACTTC
TCCTGAGAATGATTTCCCCTCTCCAAGAGAAAAACATATTTCGATTTACTCATCCGGGCACGCC
CCCTTGATTGGATAAAGCTATTAACAGTTTCAGGGAGATCAAACCGCACAACAAGGCAGCAAGT
CTGAATATCAAGTCCCTCCTCACCTACACTAGTAGCAACCAAAAGGTTTACCTCACCCGAAGAG
AACTTTTCAATGATAGAACTCATCTTATCCCTTGACATATTCCTTAACCCCGAGTGGCATCCCA
CAAGAAACTCACATCTCCAAAAATCAAGGCACTTCAGATTTTGGAGAATTTGAACTACTACTCT
TGCGACAATGATTCTTTTCACAAAAACAATGCACTTCATGTTTTCCTCCAAC

Genomic sequence CTTTGTTTAAAATGTTCTGCATACGTTGCACCGTTCAACTCACTTTTAGCATTTGTTCCATCCA
GAATGGCATCAACGAAGAAAAACAGGTCGGTGTGGGGAGTATAGACCAAACTGCCAATCACATC
AGCTTTGTTGTATGTTCCACCAAGAAGCTTCAAAGACTCATTTGGTAAATATGAATCATGCAGA
GACAAACCCATTGGATCTTGAAATGCAGGTGATGATAAACACCGCTTTACTGCTGGCCAATCAA
TCATATTATCACCATAGAATTTCTGCTTGATGGGAAGTAAAAGGTAAAATGTTGAATCCATGTC
CAATGCACCATCATTCCCCAACAAAATATAAGATGGTGTGAACTCAGATCTATCCAGGAGAACT
TTCAAAAACATTTCTTGAAAATTGTGTGCGAGTATCATCTGTAAGATAAAAGAAAAAAGACATG
TCAGGCATTGCTCCCTGAAAATTTTGTGTTGGCATCTGAACAGATAAGCAAGACAGTGCCTCTT
CTTTGTTAAACTCAATCTTTCCCAAATATTTAATTCCTGCTTTCACAATCCTCGCACGAGCAAG
ATGCAATTCAACATCCAACTTTTCAGATTCCTCTGGAAGGCGATTGATCACAAAAAGACCAAAC
ATCTGATATCGTCTATCTGCTGGTATGGGAATAAATTCTATGTAATAGAAATGCAACTTAAACG
AGGAGTCTAGTTTGCATCTTGAAGGTCTCAGAACTGCAGGGATTAACATCTCATAAAGCTCTTC
CCTAAAACTTTCATCTGAAAATGGAAAAAATATGTTTAAGCTAAATTACCAATATTTTCCGCAT
TATATTCTGAATAATGAACGATGACCATACCATCGTCTTTGTTGCTTTCTGAATTATTTGTTGT
TGATACCTTAATCTTTCTAGAGCCTTGGCCAGGTAGAAGAAAATCTGTCAAAGCACCGAGTTCA
TGAAGTTTGATGCATGCTTTCAAGCATGCATCTCTCTTAGCTTCATCTTTCGATGGACAGGGTT
GACCATTCACTTGACGGAAAGCAGCATTTGGTGGAAGAATTAATTTGCATACTATTCCATCGAC
GTCATCAACAAAGAAGAATGATGGGGAAGGAACAAAAAAACTGCAACAAGATGTATCAAATTAT
TCTAGGATATTCCCATGACACAAAATGGGTAGAATAATAAATGATCCTTTGCATACATATCTCT
AGGAAGGTTATCACAGTAGCGATGTAATAGAGATACACTGCAAGCAGTGCTAATGGAAGCACCA
GTATCATTGACTCGATAGATGTTCTCCTCAAGGCAATTGAACATATCATTTGATGTTCTCAAGT
TAATCTCTTTATCCATAATGATTTCACCAGTAATATAATCATCAAGTAACTTCTCCTGAGAATG
ATTTCCCCTAGTAAATATCAAAATGAAGAGCTTCAAGGTCTAGAACCAAAAACAAGGAACTAAA
TTCAAGGAAAATGTTAATAGCATTATGATAGGTTTGTGTAAATTAGAACAGTGTAATCGGTGAG
TGGGTGTGTGTGCTCATGTGGGTGGGTGTTACGAAAATGACCTCTCCAAGAGAAAAACATATTT
CGATTTACTCATCCGGGCACGCCCCCTTGATTGGATAAAGCTATTAACAGTTTCAGGGAGATCA
AACCGCACAACAAGGCAGCAAGTCTGAATATCAAGTCCCTCCTCACCTACACTAGTAGCAACCA
AAAGGTTTACCTGCAAAAAAAGTATTGAAAAAGGCTGTAACACAAGAAGCATAAACATATATAC
TGGTGTTAGTGGAGATAATAGATAAACCTGACAAGAACTATTAAGGATGGACAGACTTCAGATT
ATACCTCACCCGAAGAGAACTTTTCAATGATAGAACTCATCTTATCCCTTGACATATTCCTTAA
CCCCGAGTGGCATCCCACAAGAAACTCACATCTCCAAAAATCAAGGCACTTCAGATTTTGGAGA
ATTTGAACTACTACTCTTGCGACAATGATTCTTTTCACAAAAACAATGCACTTCATGTTTTCCT
CCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.198757659
Functional Information
Coding potential Y
Potential coding position 131202680-131200775(+)
131202712-131200673(-)
Potential amino acid sequence MILFTKTMHFMFSSNLCLKCSAYVAPFNSLLAFVPSRMASTKKNRSVWGV*(+)
MKCIVFVKRIIVARVVVQILQNLKCLDFWRCEFLVGCHSGLRNMSRDKMSSIIEKFSSGEVNLL
VATSVGEEGLDIQTCCLVVRFDLPETVNSFIQSRGRARMSKSKYVFLLERGNHSQEKLLDDYIT
GEIIMDKEINLRTSNDMFNCLEENIYRVNDTGASISTACSVSLLHRYCDNLPRDIFFVPSPSFF
FVDDVDGIVCKLILPPNAAFRQVNGQPCPSKDEAKRDACLKACIKLHELGALTDFLLPGQGSRK
IKVSTTNNSESNKDDDESFREELYEMLIPAVLRPSRCKLDSSFKLHFYYIEFIPIPADRRYQMF
GLFVINRLPEESEKLDVELHLARARIVKAGIKYLGKIEFNKEEMILAHNFQEMFLKVLLDRSEF
TPSYILLGNDGALDMDSTFYLLLPIKQKFYGDNMIDWPAVKRCLSSPAFQDPMGLSLHDSYLPN
ESLKLLGGTYNKADVIGSLVYTPHTDLFFFVDAILDGTNAKSELNGATYAEHFKQRLEENMKCI
VFVKRIIVARVVVQILQNLKCLDFWRCEFLVGCHSGLRNMSRDKMSSIIEKFSSGEVNLLVATS
VGEEGLDIQTCCLVVRFDLPETVNSFIQSRGRARMSKSKYVFLLERGNHSQEKLLDDYITGEII
MDKEINLRTSNDMFNCLEENIYRVNDTGASISTACSVSLLHRYCDNLPRDIFFVPSPSFFFVDD
VDGIVCKLILPPNAAFRQVNGQPCPSKDEAKRDACLKACIKLHELGALTDFLLPGQGSRKIKVS
TTNNSESNKDDDESFREELYEMLIPAVLRPSRCKLDSSFKLHFYYIEFIPIPADRRYQMFGLFV
INRLPEESEKLDVELHLARARIVKAGIKYLGKIEFNKEEMILAHNFQEMFLKVLLDRSEFTPSY
ILLGNDGALDMDSTFYLLLPIKQKFYGDNMIDWPAVKRCLSSPAFQDPMGLSLHDSYLPNESLK
LLGGTYNKADVIGSLVYTPHTDLFFFVDAILDGTNAKSELNGATYAEHFKQRLEENMKCIVFVK
RIIVARVVVQILQNLKCLDFWRCEFLVGCHSGLRNMSRDKMSSIIEKFSSGEVNLLVATSVGEE
GLDIQTCCLVVRFDLPETVNSFIQSRGRARMSKSKYVFLLERGNHSQEKLLDDYITGEIIMDKE
INLRTSNDMFNCLEENIYRVNDTGASISTACSVSLLHRYCDNLPRDIFFVPSPSFFFVDDVDGI
VCKLILPPNAAFRQVNGQPCPSKDEAKRDACLKACIKLHELGALTDFLLPGQGSRKIKVSTTNN
SESNKDDDESFREELYEMLIPAVLRPSRCKLDSSFKLHFYYIEFIPIPADRRYQMFGLFVINRL
PEESEKLDVELHLARARIVKAGIKYLGKIEFNKEEMILAHNFQEMFLKVLLDRSEFTPSYILLG
NDGALDMDSTFYLLLPIKQKFYGDNMIDWPAVKRCLSSPAFQDPMGLSLHDSYLPNESLKLLGG
TYNKADVIGSLVYTPHTDLFFFVDAILDGTNAKSELNGATYAEHFKQRLEENMKCIVFVKRIIV
ARVVVQILQNLKCLDFWRCEFLVGCHSGLRNMSRDKMSSIIEKFSSGEVNLLVATSVGEEGLDI
QTCCLVVRFDLPETVNSFIQSRGRARMSKSKYVFLLERGNHSQEKLLDDYITGEIIMDKEINLR
TSNDMFNCLEENIYRVNDTGASISTACSVSLLHRYCDNLPRDIFFVPSPSFFFVDDVDGIVCKL
ILPPNAAFRQVNGQPCPSKDEAKRDACLKACIKLHELGALTDFLLPGQGSRKIKVSTTNNSESN
KDDDESFREELYEMLIPAVLRPSRCKLDSSFKLHFYYIEFIPIPADRRYQMFGLFVINRLPEES
EKLDVELHLARARIVKAGIKYLGKIEFNKEEMILAHNFQEMFLKVLLDRSEFTPSYILLGNDGA
LDMDSTFYLLLPIKQKFYGDNMIDWPAVKRCLSSPAFQDPMGLSLHDSYLPNESLKLLGGTYNK
ADVIGSLVYTPHTDLFFFVDAILDGTNAKSELNGATYAEHFKQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b